Publications by

(Chronological order)
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1 P.M.A. Sloot and C.G. Figdor: Elastic light scattering from nucleated bloodcells: Rapid numerical analysis, Applied Optics, vol. 25, pp. 3559. 1986.
2 P.M.A. Sloot; M.J. Carels; P. Tensen and C.G. Figdor: Computer Assisted Centrifugal Elutriation I. Detection system and data acquisition equipment, Computer Methods and Programs in Biomedicine, vol. 24, nr 3 pp. 179-188. June 1987.
3 P.M.A. Sloot; P. Tensen and C.G. Figdor: Spectral analysis of flow cytometric data: Design of a special purpose low-pass digital filter, Cytometry, vol. 8, pp. 545-551. 1987.
4 P.M.A. Sloot; E.H.M. van der Donk and C.G. Figdor: Computer Assisted Centrifugal Elutriation II. Multiparametric statistical analysis, Computer Methods and Programs in Biomedicine, vol. 27, pp. 37-46. 1988.
5 P.M.A. Sloot; A.G. Hoekstra and C.G. Figdor: Osmotic response of lymphocytes measured by means of forward lightscattering: Theoretical considerations, Cytometry, vol. 9, pp. 636-641. 1988.
6 P.M.A. Sloot: Elastic light scattering from leukocytes, in the development of computer assisted cell separation, PhD thesis, University of Amsterdam, Amsterdam, The Netherlands, (Promotor: Prof. dr. L.O. Hertzberger, co-promotor: Prof.dr. C.G. Figdor) 1988.
7 P.M.A. Sloot; M.J. Carels and A.G. Hoekstra: CACE: a case of Embedded System Development, in P.M.G. Apers and J. van Leeuwen, editors, Computing Science in the Netherlands, CWI, pp. 441-462. Amsterdam, The Netherlands, 1989.
8 P.M.A. Sloot; A.G. Hoekstra; H. van de Liet and C.G. Figdor: Scatter matrix elements of biological particles measured in a flow-through system: Theory and practice, Applied Optics, vol. 28, pp. 1752-1762. 1989.
9 P.M.A. Sloot and C.G. Figdor: Ternary representation of trivariate data, Cytometry, vol. 10, pp. 77-80. 1989.
10 P.M.A. Sloot and A.G. Hoekstra: Arbitrarily-shaped particles measured in Flow-through systems, in E. Dan Hirleman, editor, The 2nd internaltional congress on particle sizing, Arizona State University, pp. 605-611. Tempe, Arizona, March 1990.
11 P.M.A. Sloot and A.G. Hoekstra: Morphological characteristics of nucleated bloodcells studied by elastic light scattering, in E. Dan Hirleman, editor, The 2nd international congress on particle sizing, Arizona State University, pp. 382-394. Tempe, Arizona, March 1990.
12 A.G. Hoekstra; P.M.A. Sloot; M.J. Haan and L.O. Hertzberger: Time complexity analysis for distributed memory computers: Implementation of a parallel Conjugate Gradient method, in J. van Leeuwen, editor, Computing Science in the Netherlands, pp. 249-266. Amsterdam, The Netherlands, 1991.
13 A.G. Hoekstra; J. Aten and P.M.A. Sloot: The effect of aniosmotic media on the volume of the T-lymphocyte nucleus, Biophysical Journal, vol. 59, pp. 765-774. 1991.
14 A.G. Hoekstra; L.O. Hertzberger and P.M.A. Sloot: Simulation of Elastic Light Scattering on distributed memory machines, Bulletin of the American Physical Society, (abstract) vol. 36, pp. 1798-1798. 1991.
15 B.J. Overeinder; L.O. Hertzberger and P.M.A. Sloot: Parallel Discrete Event Simulation, in W.J. Withagen, editor, The Third Workshop Computersystems, Faculty of Electrical Engineering, Eindhoven University, pp. 19-30. Eindhoven, The Netherlands, May 1991.
16 P.M.A. Sloot: Wegwijs in Wiskunde, PC+, (Article in Dutch) vol. 22, pp. 36. 1991.
17 R.G. Belleman; P.M.A. Sloot and L.O. Hertzberger: Multivariate data processing system: transputer based data acquisition, analysis and presentation, in Parallel Computing and Transputer Applications (PACTA 92), pp. 1147-1155. IOS Press, Washington, Amsterdam, The Netherlands, September 1992.
18 R. Graaff; J.G. Aarnoudse; J.R. Zijp; P.M.A. Sloot; F.F.M. de Mul; J. Greve and M.H. Koelink: Reduced light-scattering properties for mixtures off spherical particles: a simple approximation derived from Mie Calculations, Applied Optics, vol. 31, pp. 1370-1376. 1992.
19 A. ter Laak; L.O. Hertzberger and P.M.A. Sloot: Nonconvex continuous optimization experiments on a transputer system, in A. Allen, editor, Transputer systems ongoing research, WoTUG 15, in series Transputer and OCCAM Engeneering Series, vol. 25, pp. 251-265. IOS Press, 1992.
20 M. van Muiswinkel; L.H. Trip and P.M.A. Sloot: Parallel Sound Synthesis: Parallel Sonification of Multivariate data on a transputer platform, in Parallel Computing and Transputer Applications (PACTA 92), pp. 1156-1164. IOS Press, Amsterdam, Washington, September 1992.
21 B.J. Overeinder; P.M.A. Sloot and L.O. Hertzberger: Time Warp on a Transputer Platform: Pilot Study with Asynchronous Cellular Automata, in M. Valero; E. Onate; M. Jane; J.L. Larriba and B. Suarez, editors, Parallel Computing and Transputer Applications (PACTA 92), pp. 1303-1312. IOS Press, Amsterdam, Washington, September 1992.
22 P.M.A. Sloot; A.G. Hoekstra; W. Hoffmann and L.O. Hertzberger: Time Complexity of a Parallel Conjugate Gradient Solver for Light Scattering Simulations: Theory and SPMD Implementation, Dept. of Comp. Sys., Univ. of Amsterdam, number CS-92-06, June 1992.
23 P.M.A. Sloot: Multiprocessing zorgt voor teamwork, PC+, (Article in Dutch) vol. 8, nr 21 pp. 22-24. 1992.
24 P.M.A. Sloot and A.G. Hoekstra: Implementation of a parallel conjugate gradient method for simulation of elastic light scattering, Computers in Physics, (abstract) vol. 6, pp. 323-323. August 1992.
25 P.M.A. Sloot; A. ter Laak; P. Pandolfi and R. van Dantzig: Crystallization on a Sphere: Parallel Simulation on a Transputer Network, Computers in Physics, vol. 6, pp. 307-308. August 1992.
26 P.M.A. Sloot: De Computer Oorlog, PC+, (Article in Dutch) vol. 8, nr 20 pp. 20-1. 1992.
27 M. Bergman and P.M.A. Sloot: Basic Linear Algebra Subsystems, Dept. of Comp. Sys., Univ. of Amsterdam, number CAMAS-TR-2.1.2.1, Department of Computer Systems, University of Amsterdam, The Netherlands, September 1993.
28 R.M.P. Doornbos; A.G. Hoekstra; K.E.I. Deurloo; B.G. de Grooth; P.M.A. Sloot and J. Greve: Polarization measurements in a Flow Cytometer; Lissajous Pattererns in scatter plots of calibrations beads, Cytometry, vol. Supplement 6, 1993.
29 A.G. Hoekstra and P.M.A. Sloot: New computational techniques to simulate Light Scattering from arbitrary particles, in M. Maeda, editor, The 3rd International Congress on Optical Particle Sizing '93, pp. 167-172. Yokohama, Japan, August 1993.
30 A.G. Hoekstra and P.M.A. Sloot: Implementation of a Parallel Conjugate Gradient Method for Simulation of Elastic Light, in R.A. de Groot and E.J. Nadrachal, editors, The 4th international conference Physics Computing '92, pp. 345-346. World Scientific Singapore, Prague, Czechoslovakia, 1993.
31 A.G. Hoekstra and P.M.A. Sloot: Simulating Elastic Light Scattering using High Performance Computing methods, in A. Verbraeck and E.J.H. Kerckhoffs, editors, European Simulation Symposium 1993, Society for Computer Simulation International, pp. 462 - 467. Simulation Councils Inc., San Diego, Delft, The Netherlands, October 1993.
32 A.G. Hoekstra and P.M.A. Sloot: Dipolar Unit Size in Coupled Dipole Calculations of the Scattering Matrix Elements Elements, Optics Letters, vol. 18, pp. 1211-1213. 1993.
33 A.G. Hoekstra; R.M.P. Doornbos; K.E.I. Deurloo; H.J. Noordmans; B.G. de Grooth and P.M.A. Sloot: An unexpected signature of Lorenz-Mie scattering observed in FlowCytometric experiments, in M. Maeda, editor, The 3rd International Congress on Optical Particle Sizing '93, pp. 153-158. Yokohama, Japan, August 1993.
34 G. Lonsdale; J. Clinckemaillie; S. Vlachoutsis; J.F. de Ronde; P.M.A. Sloot; N. Floros and J.F. Reeve: Crashworthiness simulation migration to distributed memory and MIMD machines, in The 26th International Symposium on Automotive Technology and Automation, Automotive Automation Limited, pp. 237-244. Croydon, England, 1993.
35 A. de Mes and P.M.A. Sloot: Parasol I Progress Report, Dept. of Comp. Sys., Univ. of Amsterdam, number CAMAS-TR-2.1.1.3, Department of Computer Systems, University of Amsterdam, The Netherlands, September 1993.
36 B.J. Overeinder and P.M.A. Sloot: Application of Time Warp to Parallel simulations with asynchronous cellular automata, in A. Verbraeck and E.J.H. Kerckhoffs, editors, European Simulation Symposium 1993, Society for Computer Simulation International, pp. 397-402. Delft, The Netherlands, October 1993.
37 J.F. de Ronde; M. Bergman; P. Trenning and P.M.A. Sloot: Application Simulator, Dept. of Comp. Sys., Univ. of Amsterdam, number CAMAS-TR-2.1.1.2, Department of Computer Systems, University of Amsterdam, The Netherlands, May 1993.
38 J.F. de Ronde; P.M.A. Sloot; M. Beemster and L.O. Hertzberger: A simulation methodology for the prediction of SPMD programs performance, in A. Verbraeck and E.J.H. Kerckhoffs, editors, European Simulation Symposium 1993, Society for Computer Simulation International, pp. 24-25. Delft, The Netherlands, October 1993.
39 J.F. de Ronde; A.W. van Halderen; M. Beemster and P.M.A. Sloot: SAD/Parasol II Progress Report, Dept. of Comp. Sys., Univ. of Amsterdam, number CAMAS-TR-2.2.4.2, Department of Computer Systems, University of Amsterdam, The Netherlands, September 1993.
40 J.F. de Ronde and P.M.A. Sloot: SAD position paper, Dept. of Comp. Sys., Univ. of Amsterdam, number CAMAS-TR-2.2.4.1, Department of Computer Systems, University of Amsterdam, The Netherlands, March 1993.
41 J.F. de Ronde and P.M.A. Sloot: Parasol I&II position paper, Dept. of Comp. Sys., Univ. of Amsterdam, number CAMAS-TR-2.1.1.1, Department of Computer Systems, University of Amsterdam, The Netherlands, March 1993.
42 P.M.A. Sloot; A. ter Laak; P. Pandolfi; R. van Dantzig and D. Frenkel: Crystallization on a Sphere, in R.A. de Groot and E.J. Nadrachal, editors, The 4th international conference Physics Computing '92, pp. 471-472. World Scientific Singapore, Prague, Czechoslovakia, 1993.
43 P.M.A. Sloot and A.G. Hoekstra: Light Scattering simulations on a massively parallel computer at the IC3A, Transputer Applications, vol. 1, nr 1 pp. 42-49. 1993.
44 P.M.A. Sloot and J.F. Reeve: The CAMAS Workbench, University of Southampton and University of Amsterdam, number CAMAS-TR-2.3.1.1, University of Southampton and University of Amsterdam, United Kingdom, The Netherlands, March 1993.
45 P.M.A. Sloot; J.M. Voogd; D. de Kanter and L.O. Hertzberger: Simulated annealing: Comparison of vector and parallel implementations, Dept. of Comp. Sys., Univ. of Amsterdam, number CS-93-06, Department of Computer Systems, University of Amsterdam, The Netherlands, October 1993.
46 P.M.A. Sloot and L.O. Hertzberger: PERFORM, Dept. of Comp. Sys., Univ. of Amsterdam, number CS-93-xx, Department of Computer Systems, University of Amsterdam, The Netherlands, September 1993.
47 J.M. Voogd and P.M.A. Sloot: Simulated annealing on H.P.C. systems: Applied to crystallization with spherical boundary conditions, in A. Verbraeck and E.J.H. Kerckhoffs, editors, European Simulation Symposium 1993, Society for Computer Simulation International, pp. 371-376. Delft, The Netherlands, October 1993.
48 M. Bergman and P.M.A. Sloot: IPS Position Paper: Preconditioning for the Conjugate Gradient Method, Dept. of Comp. Sys., Univ. of Amsterdam, number CAMAS-TR-2.1.2.2, Department of Computer Systems, University of Amsterdam, The Netherlands, March 1994.
49 M. Bergman; W. Hoffmann and P.M.A. Sloot: IPS Progress Report, Dept. of Comp. Sys., Univ. of Amsterdam, number CAMAS-TR-2.1.2.3, Department of Computer Systems, University of Amsterdam, The Netherlands, September 1994.
50 L. Dikken; F. van der Linden; J.J.J. Vesseur and P.M.A. Sloot: DynamicPVM: Dynamic Load Balancing on Parallel Systems, in W. Gentzsch and U. Harms, editors, High Performance Computing and Networking, in series Lecture notes in computer science, vol. 797, nr II, Networking and Tools pp. 273-277. Springer-Verlag, Berlin, Germany, April 1994.
51 R.M.P. Doornbos; A.G. Hoekstra; K.E.I. Deurloo; B.G. de Grooth; P.M.A. Sloot and J. Greve: Lissajous-Like Patterns in Scatter Plots of Calibration Beads, Cytometry, vol. 16, pp. 236-242. 1994.
52 A.W. van Halderen; J.F. de Ronde; M. Beemster and P.M.A. Sloot: SAD Technical Report, Dept. of Comp. Sys., Univ. of Amsterdam, number CAMAS-TR-2.2.4.3, Department of Computer Systems, University of Amsterdam, The Netherlands, March 1994.
53 A.W. van Halderen; J.F. de Ronde; M. Beemster and P.M.A. Sloot: SAD Progress Report, Dept. of Comp. Sys., Univ. of Amsterdam, number CAMAS-TR-2.2.4.4, Department of Computer Systems, University of Amsterdam, The Netherlands, October 1994.
54 A.G. Hoekstra; R.M.P. Doornbos; K.E.I. Deurloo; H.J. Noordmans; B.G. de Grooth and P.M.A. Sloot: Yet another face of Lorenz-Mie scattering: monodisperse distributions of spheres produce Lissajous-like patterns, Applied Optics, vol. 33, pp. 494-500. January 1994.
55 A.G. Hoekstra and P.M.A. Sloot: New Computational Techniques to Simulate Light Scattering from Arbitrary Particles, Particle Particle Systems Characterization, vol. 11, pp. 189-193. 1994.
56 F. van der Linden; J. Petersen and P.M.A. Sloot: PVM/PARIX Progress Report, Dept. of Comp. Sys., Univ. of Amsterdam, number CAMAS-TR-2.3.3, Department of Computer Systems, University of Amsterdam, The Netherlands, March 1994.
57 A. de Mes and P.M.A. Sloot: Presentation on the status of Parasol, Dept. of Comp. Sys., Univ. of Amsterdam, number CAMAS-TR-2.1.1.5, Department of Computer Systems, University of Amsterdam, The Netherlands, November 1994.
58 A. de Mes; M. Beemster; J.F. de Ronde and P.M.A. Sloot: Parasol I Technical Report, Dept. of Comp. Sys., Univ. of Amsterdam, number CAMAS-TR-2.1.1.4, Department of Computer Systems, University of Amsterdam, The Netherlands, March 1994.
59 B.J. Overeinder; P.M.A. Sloot and J. Petersen: Finalization Report: Homogeneous PVM/PARIX, Dept. of Comp. Sys., Univ. of Amsterdam, number CAMAS-TR-2.3.4, Department of Computer Systems, University of Amsterdam, The Netherlands, October 1994.
60 A.D. Pimentel; J. van Brummen; T. Papathanassiadis; P.M.A. Sloot and L.O. Hertzberger: Mermaid: modelling and evaluation research in MIMD Architecture Design, Dept. of Comp. Sys., Univ. of Amsterdam, number CS-94-26, Department of Computer Systems, University of Amsterdam, The Netherlands, December 1994.
61 J.F. de Ronde; P.M.A. Sloot; M. Beemster and L.O. Hertzberger: The CAMAS workbench: Computer Aided Migration of Applications System, Future Generation Computer Systems, vol. 10, nr 2 & 3 pp. 305-308. June 1994.
62 J.F. de Ronde; M. Bergman and P.M.A. Sloot: MAP Position Paper, Dept. of Comp. Sys., Univ. of Amsterdam, number CAMAS-TR-2.1.3.1, Department of Computer Systems, University of Amsterdam, The Netherlands, March 1994.
63 J.F. de Ronde; A.W. van Halderen; A. de Mes; M. Beemster and P.M.A. Sloot: Automatic Performance Estimation of SPMD Programs on MPP, in L. Dekker; W. Smit and J.C. Zuidervaart, editors, Massively Parallel Applications and Development, EUROSIM Conference on Massively Parallel Processing Applications and Development, pp. 381-388. Elsevier, North-Holland, Delft, The Netherlands, June 1994.
64 J.F. de Ronde and P.M.A. Sloot: MAP Design Report, Dept. of Comp. Sys., Univ. of Amsterdam, number CAMAS-TR-2.1.3.2, Department of Computer Systems, University of Amsterdam, The Netherlands, September 1994.
65 P.M.A. Sloot; A.G. Hoekstra and L.O. Hertzberger: A Comparison of the Iserver-Occam, Parix, Express, and PVM Programming Environments on a Parsytec GCel, in W. Gentzsch and U. Harms, editors, High Performance Computing and Networking, in series Lecture notes in computer science, vol. 797, nr II, Networking and Tools pp. 253-259. Springer-Verlag, Berlin, Germany, April 1994.
66 P.M.A. Sloot: Modelling and Simulation, Dept. of Comp. Sys., Univ. of Amsterdam, number CS-94-12, Department of Computer Systems, University of Amsterdam, The Netherlands, August 1994.
67 P.M.A. Sloot: Modelling and Simulation, in Proceedings of the 1994 CERN School of Computing, pp. 177-226. Sopron, Hungary, September 1994. ISBN: 92-9083-069-7, ISSN: 0304-2898.
68 J.M. Voogd; P.M.A. Sloot and R. van Dantzig: Simulated Annealing for N-body Systems, in W. Gentzsch and U. Harms, editors, High Performance Computing and Networking I, Applications, in series Lecture notes in computer science, vol. 796, pp. 293-298. Springer-Verlag, Berlin, Germany, April 1994.
69 J.M. Voogd; R. van Dantzig and P.M.A. Sloot: Two-dimensional Crystallisation on spherical surfaces, in R. Gruber and M. Tomassini, editors, Proceedings of the 6th joint EPS-APS International Conference on Physics Computing, European Physical Society, pp. 463-466. European Physical Society, Geneva, Switserland, Lugano, Switzerland, August 1994.
70 J.M. Voogd; P.M.A. Sloot and R. van Dantzig: Crystallization on a Sphere, Future Generation Computer Systems, vol. 10, nr 2 & 3 pp. 359-361. June 1994.
71 M. Bergman; W. Hoffmann and P.M.A. Sloot: IPS final report, Dept. of Comp. Sys., University of Amsterdam, number CAMAS-TR-2.1.2.5, Amsterdam, September 1995.
72 M. Bergman and P.M.A. Sloot: Domain Decomposition by Parallel and Weighted RSB, in Gerbrands,J.J.; van Steed,M.R.; van Katwijk,J. and Tonino,J.F.M., editors, ASCI 1995 Conference Proceedings, pp. 368-376. Advanced School for Computing and Imaging (ASCI), 1995.
73 M. Bergman and P.M.A. Sloot: IPS technical report, Dept. of Comp. Sys., University of Amsterdam, number CAMAS-TR-2.1.2.4, Amsterdam, March 1995.
74 A.W. van Halderen; J.F. de Ronde and P.M.A. Sloot: Memory requirements of F2SAD, Dept. of Comp. Sys., Univ. of Amsterdam, number CAMAS-TR-2.2.4.5, Department of Computer Systems, University of Amsterdam, The Netherlands, March 1995.
75 A.W. van Halderen; J.F. de Ronde and P.M.A. Sloot: SAD/Parasol II, Joined Report, Dept. of Comp. Sys., Univ. of Amsterdam, number CAMAS-TR-2.1.1.6, Department of Computer Systems, University of Amsterdam, The Netherlands, March 1995.
76 A.W. van Halderen; J.F. de Ronde and P.M.A. Sloot: F2SAD - prediction capabilities, Dept. of Comp. Sys., Univ. of Amsterdam, number CAMAS-TR-2.2.4.6, Department of Computer Systems, University of Amsterdam, The Netherlands, March 1995.
77 A.W. van Halderen and P.M.A. Sloot: Parasol/SAD Final Report, Dept. of Comp. Sys., Univ. of Amsterdam, number CAMAS-TR-2.1.1.7, Department of Computer Systems, University of Amsterdam, The Netherlands, October 1995.
78 A.G. Hoekstra and P.M.A. Sloot: Coupled dipole simulations of elastic light scattering on parallel systems, International Journal of Modern Physics C, vol. 6, nr 5 pp. 663-679. 1995.
79 A.G. Hoekstra and P.M.A. Sloot: Development of Parallel Hierarchical Methods, PowerXplorer User Report, 1st edition, pp. 70-76. Parsytec, Aachen, Germany, May 1995.
80 A.G. Hoekstra; P.M.A. Sloot and L.O. Hertzberger: Comparing the Parix and PVM parallel programming enviroments, in Transputer and Occam Engineering Series, Parallel Programming and Applications, Workshop Proceedings, pp. 13-17. IOS Press, Amsterdam, Netherlands, 1995.
81 A.G. Hoekstra; P.M.A. Sloot and L.O. Hertzberger: Comparing the Parix and PVM parallel programming environments, in Gerbrands,J.J.; van Steen,M.R.; van Katwijk,J. and Tonino,J.F.M., editors, ASCI 1995 Conference Proceedings, pp. 288-292. Advanced School for Computing and Imaging (ASCI), 1995.
82 A.G. Hoekstra and P.M.A. Sloot: Simulating Elastic Light Scattering, PowerXplorer User Report, 1st edition, pp. 65-69. Parsytec, Aachen, Germany, May 1995.
83 J.A. Kaandorp and P.M.A. Sloot: A Parallel Hybrid Solver for Diffusion Limited Growth, in Finmo,L. and Fritzon,P., editors, Transputer and Occam Engineering Series, Parallel Programming and Applications, Workshop Proceedings, pp. 254-258. IOS Press, Amsterdam, Netherlands, 1995.
84 J.A. Kaandorp and P.M.A. Sloot: Parallel Solvers for Simulating Morphogenesis, PowerXplorer User Report, 1st edition, pp. 77-84. Parsytec, Aachen, Germany, May 1995.
85 J.A. Kaandorp; C.P. Lowe; D. Frenkel; P.M.A. Sloot and N.C. Rozemeijer: Flow and diffusion Limited growth of aggregates, (video made at the University of Amsterdam) 1995.
86 B.J. Overeinder; J.J.J. Vesseur; F. van der Linden and P.M.A. Sloot: A Communication Kernel for Parallel Programming Support on a Massively Parallel Processor System, in Gerbrands,J.J.; Steen,M.R.; van Katwijk,J. and Tonino,J.F.M., editors, ASCI 1995 Conference Proceedings, pp. 157-164. Advanced School for Computing and Imaging (ASCI), 1995.
87 B.J. Overeinder and P.M.A. Sloot: Parallel Performance Evaluation through Critical Path Analysis, in L.O. Hertzberger and G. Serazzi, editors, High-Performance Computing and Networking (HPCN Europe '95), Milan, Italy, in series Lecture Notes in Computer Science, nr 919 pp. 634-639. Springer-Verlag, Berlin, Germany, May 1995.
88 B.J. Overeinder; J.J.J. Vesseur; F. van der Linden and P.M.A. Sloot: A Communication Kernel for Parallel Programming Support on a Massively Parallel Processor System, in P. Fritzon and L. Finmo, editors, Proceedings of the Workshop on Parallel Programming and Computation (ZEUS'95) and the 4th Nordic Transputer Conference (NTUG'95), pp. 259-266. IOS Press, Amsterdam, 1995. ISBN: 90-5199-299-7.
89 B.J. Overeinder and P.M.A. Sloot: Parallel Discrete Event Simulation Performance Modeling and Evaluation, PowerXplorer User Report, 1st edition, pp. 137-144. Parsytec, Aachen, Germany, May 1995.
90 A.D. Pimentel; L.O. Hertzberger and P.M.A. Sloot: Mermaid: Modelling and Evaluation Research in MIMD Architecture Design, PowerXplorer User Report, 1st edition, pp. 145-151. Parsytec, Aachen, Germany, May 1995.
91 A.D. Pimentel; J. van Brummen; T. Papathanassiadis; P.M.A. Sloot and L.O. Hertzberger: Mermaid: modelling and evaluation research in MIMD architecture design, in Lecture Notes in Computer Science 919, High Performance Computing and Networking, pp. 335-340. Springer-Verlag, Berlin, Germany, May 1995.
92 J.F. de Ronde and P.M.A. Sloot: MAP progress report, Dept. of Comp. Sys., Univ. of Amsterdam, number CAMAS-TR-2.1.3.3, March 1995.
93 J.F. de Ronde; A.W. van Halderen and P.M.A. Sloot: User scenario UvA tools, Dept. of Comp. Sys., Univ. of Amsterdam, number CAMAS-TR-2.3.5.1, April 1995.
94 J.F. de Ronde and P.M.A. Sloot: Concepts of Meta Modelling: A case study of code development for distributed memory architectures, in Gerbrands,J.J.; van Steen,M.R.; van Katwijk,J. and Tonino,J.F.M., editors, ASCI 1995 Conference Proceedings, pp. 175-184. Advanced School for Computing and Imaging (ASCI), 1995.
95 J.F. de Ronde and P.M.A. Sloot: MAP final report, Dept. of Comp. Sys., Univ. of Amsterdam, number CAMAS-TR-2.1.3.4, March 1995.
96 A. Schoneveld; J.A. Kaandorp and P.M.A. Sloot: Parallel Dynamical Complex Systems, PowerXplorer User Report, 1st edition, pp. 152-156. Parsytec, Aachen, Germany, May 1995.
97 P.M.A. Sloot: High Performance Simulation, EUROSIM - Simulation News Europe, vol. 1, nr 15 pp. 15-18. November 1995.
98 P.M.A. Sloot and J.M. Voogd: Simulated Annealing: A trade-off between Vector and Parallel Implementations, in Finmo,L. and Fritzon,P., editors, Transputer and Occam Engineering Series, Parallel Programming and Applications, Workshop Proceedings, pp. 267-274. IOS Press, Amsterdam, Netherlands, 1995.
99 P.M.A. Sloot: Computational Physics: Stochastic Simulation, Dept. of Comp. Sys., Univ. of Amsterdam, number CS-95-xx, Department of Computer Systems, University of Amsterdam, The Netherlands, September 1995.
100 P.M.A. Sloot: Guest Editorial: Massive Parallel Computing, Future Generation Computer Systems, vol. 11, nr 2 pp. 113-114. March 1995.
101 P.M.A. Sloot: Special Issue on massive parallel computing, Future Generation Computer Systems, (Guest Editorship) March 1995.
102 P.M.A. Sloot: Modelling for Parallel Simulation: Possibilities and Pitfalls, invited lecture, in I. Husinsky and F. Breitenecker, editors, Eurosim '95, Simulation Congress, Conference Proceedings, (invited lecture) pp. 29-43. Elsevier, Amsterdam, Netherlands, September 1995.
103 P.M.A. Sloot; J.A. Kaandorp and A. Schoneveld: Dynamic Complex Systems (DCS): a new approach to parallel computing in computational physics, Dept. of Comp. Sys., Univ. of Amsterdam, number CS-95-08, December 1995.
104 J.J.J. Vesseur; R.N. Heederik; B.J. Overeinder and P.M.A. Sloot: Experiments in Dynamic Load Balancing for Parallel Cluster Computing, in Gerbrands,J.J.; Steen,M.R.; van Katwijk,J. and Tonino,J.F.M., editors, ASCI 1995 Conference Proceedings, pp. 417-421. Advanced School for Computing and Imaging (ASCI), Heijen, The Netherlands, May 1995.
105 J.J.J. Vesseur; R.N. Heederik; B.J. Overeinder and P.M.A. Sloot: Experiments in Dynamic Load Balancing for Parallel Cluster Computing, in P. Fritzon and L. Finmo, editors, Proceedings of the Workshop on Parallel Programming and Computation (ZEUS'95) and the 4th Nordic Transputer Conference (NTUG'95), in series Transputer and Occam Engineering Series, Parallel Programming and Applications, Workshop Proceedings, pp. 189-194. IOS Press, Amsterdam, June 1995. ISBN: 90-5199-299-7.
106 J.M. Voogd and P.M.A. Sloot: Simulated Annealing: Comparisons of Vector and Parallel Implementations, in ASCI 1995 Conference Proceedings, pp. 213-222. Advanced School for Computing and Imaging (ASCI), 1995.
107 J.M. Voogd; P.M.A. Sloot and R. van Dantzig: Kristallisatie op een boloppervlak, FOM, 1995.
108 J.M. Voogd; P.M.A. Sloot; R. van Dantzig and D. Frenkel: Crystalization on a sphere, University of Düsseldorf and Parsytec, 1995.
109 J.M. Voogd; P.M.A. Sloot and R. van Dantzig: Comparison of Vector and Parallel Implementations of the Simulated Annealing Algorithm, Future Generation Computer Systems, special issue HPCN '94, vol. 11, nr 4 & 5 pp. 467-475. August 1995.
110 R.M.P. Doornbos; M. Schaeffer; A.G. Hoekstra; P.M.A. Sloot; B.G. de Grooth and J. Greve: Elastic Light Scattering Measurements of Single Biological Cells in an Optical Trap, Applied Optics, vol. 34, pp. 729-734. 1996.
111 A.G. Hoekstra and P.M.A. Sloot: Parallel hierarchical methods for large scale simulations of virtual particle models, in E.J.H. Kerckhoffs; P.M.A. Sloot; J.F.M. Tonino and A.M. Vossepoel, editors, Proceedings of the second annual conference of the Advanced School for Computing and Imaging, pp. 49-53. Lommel, Belgium, 1996. ISBN 90-803086-1-7.
112 A.G. Hoekstra; L.O. Hertzberger and P.M.A. Sloot: The Optical `Fingerprints' of Cells: Catching the Bad Guys, IEEE Computational Science and Engineering, vol. Spring, pp. 4-5. 1996.
113 A.G. Hoekstra; P.M.A. Sloot; F. van der Linden; M. van Muiswinkel; J.J.J. Vesseur and L.O. Hertzberger: Native and generic parallel programming environments on a transputer and a PowerPC platform, Concurrency: Practice and Experience, vol. 8, nr 1 pp. 19-46. Jan-Feb 1996.
114 A.G. Hoekstra and P.M.A. Sloot: The Discrete Dipole Approximation - Possibilities and Problems to Simulate Elastic Light Scattering, in T. Wriedt; M. Quinten and K. Bauckhage, editors, Proceedings of the 1st Workshop on Electromagnetic and Light Scattering, Theory and Applications, University of Bremen, in series Lecture Notes in Computer Science, pp. 7-18. 1996. ISBN 3-88722-359-4.
115 A.G. Hoekstra; M.D. Grimminck and P.M.A. Sloot: Simulating Light scattering from micron-sized particles; A parallel fast discrete dipole approximation, in H. Liddell; A. Colbrook; L.O. Hertzberger and P.M.A. Sloot, editors, High-performance computing and networking, in series Lecture notes in computer science, vol. 1067, pp. 269-275. Springer-Verlag, Brussels, Belgium, 1996. ISBN 3-540-61142-8.
116 J.A. Kaandorp and P.M.A. Sloot: Modelling growth and form of marine sessile suspension feeders, in M.T. Michalewicz, editor, Advances in Computational Life Sciences Vol. I, pp. 119-132. CSIRO Publishing, Collingwood Australia, 1996.
117 J.A. Kaandorp and P.M.A. Sloot: Modelling diffusion and flow limited morphogenesis of marine sessile orginisms, in 3rd European conference of mathematics applied to biology and medicine, (abstract) Heidelberg, 1996.
118 J.A. Kaandorp; C.P. Lowe; D. Frenkel and P.M.A. Sloot: The effect of nutrient diffusion and flow on coral morphology, Physical Review Letters, vol. 77, nr 11 pp. 2328-2331. March 1996.
119 J.A. Kaandorp and P.M.A. Sloot: Modelling and simulation of accretive growth and form on a parallel platform, in E.J.H. Kerckhoffs; P.M.A. Sloot; J.F.M. Tonino and A.M. Vossepoel, editors, ASCI '96, Proceedings of the second annual conference of the Advanced School for Computing and Imaging, pp. 54-59. Advanced School for Computing and Imaging (ASCI), Delft, 1996.
120 B.D. Kandhai; P.M.A. Sloot and J.P. Huot: Constrained Migration: exploiting spatial locality, in E.J.H. Kerckhoffs; P.M.A. Sloot; J.F.M. Tonino and A.M. Vossepoel, editors, ASCI 1996 Conference Proceedings, pp. 60-65. Advanced School for Computing and Imaging (ASCI), Lommel, Belgium, 1996. ISBN 90-803086-1-7.
121 B.D. Kandhai; P.M.A. Sloot and J.P. Huot: Constrained migration of an atmospheric circulation model, in H. Liddell; A. Colbrook; L.O. Hertzberger and P.M.A. Sloot, editors, High-performance computing and networking, in series Lecture notes in computer science, nr 1067 pp. 269-275. Springer-Verlag, Brussels, Belgium, 1996. ISBN 3-540-61142-8.
122 H. Liddell; A. Colbrook; L.O. Hertzberger and P.M.A. Sloot: Proceedings High-Performance Computing and Networking (HPCN Europe '96), Brussels, Belgium, in series Lecture Notes in Computer Science, vol. 1067, 1996.
123 B.J. Overeinder; P.M.A. Sloot; R.N. Heederik and L.O. Hertzberger: A Dynamic Load Balancing System for Parallel Cluster Computing, Future Generation Computer Systems, vol. 12, nr 1 pp. 101-115. May 1996.
124 J.F. de Ronde; A. Schoneveld and P.M.A. Sloot: A genetic algorithm based tool for the mapping problem, in E.J.H. Kerckhoffs; P.M.A. Sloot; J.F.M. Tonino and A.M. Vossepoel, editors, ASCI'96: Proceedings of the 2nd annual conference of the Advanced School for Computing and Imaging, pp. 174-179. Advanced School for Computing and Imaging (ASCI), 1996.
125 J.F. de Ronde; A. Schoneveld and P.M.A. Sloot: Properties of the Task Allocation Problem, Dept. of Comp. Sys., Univ. of Amsterdam, number TR-CS-96-03, 1996.
126 J.F. de Ronde; A. Schoneveld; N. Floros; J.F. Reeve and P.M.A. Sloot: Loadbalancing by redundant decomposition and mapping, in H. Liddell; A. Colbrook; L.O. Hertzberger and P.M.A. Sloot, editors, High-Performance Computing and Networking (HPCN Europe '96), Brussels, Belgium, in series Lecture notes in computer science, vol. 1067, pp. 555-561. 1996. ISBN 3-540-61142-8.
127 A. Schoneveld; J.F. de Ronde; P.M.A. Sloot and J.A. Kaandorp: A Parallel Cellular Genetic Algorithm Used in Finite Element Simulation, in H-.M. Voigt; W. Ebeling; I. Rechenberg and H-.P. Schwefel, editors, Parallel Problem Solving from Nature (PPSN IV), in series LNCS, pp. 533-542. 1996.
128 P.M.A. Sloot and J.A. Kaandorp: Particle modelling environment for dynamic complex system simulation, in R. van Grondelle; S. van der Kolk; O.J.G. Somsen; H.V. Westerhoff and J.E. Wijker, editors, Biocomplexity and the essence of the living state, pp. 83-85. Free University, Amsterdam, 1996.
129 P.M.A. Sloot; D. Frenkel; J.A. Kaandorp and R. van Driel: Modelling and simulation of reactivity, diffusion, and flow in biological systems using the lattice Boltzmann method, in R. van Grondelle; S. van der Kolk; O.J.G. Somsen; H.V. Westerhoff and J.E. Wijker, editors, Biocomplexity and the essence of the living state, pp. 80-82. Free University, Amsterdam, 1996.
130 P.M.A. Sloot: Editorial: Resource Management in Distributed Systems, Future Generation Computer Systems, vol. 12, pp. 1-2. 1996.
131 L.O. Hertzberger and P.M.A. Sloot: Proceedings High-Performance Computing and Networking (HPCN Europe '97), Vienna, Austria, in series Lecture Notes in Computer Science, vol. 1225, 1997.
132 A.G. Hoekstra; W. Hoffmann; M.A. Kartawidjaja; B.J. Overeinder; J. Santoso and P.M.A. Sloot: A High Performance Simulation Environment, project status report, Dept. of Comp. Sys., Univ. of Amsterdam, number CS-97-04, 1997.
133 A.G. Hoekstra and P.M.A. Sloot: Elastic Light Scattering from Single Biological Cells, in J.A. Kong, editor, Progress in Electromagnetics Research Symposium 1997, pp. 583. 1997.
134 A.G. Hoekstra; P.J.H. Brinkhorst and P.M.A. Sloot: First Results of DDA Simulations of Elastic Light Scattering by Red Blood Cells, in K. Lumme; J.W. Hovenier; K. Muinonen; J. Rahola and H. Laitinen, editors, Proceedings Workshop on Light Scattering by Non-Spherical Particles (SCANOP), pp. 39-40. 1997.
135 J.A. Kaandorp and P.M.A. Sloot: Parallel simulation of accretive growth in 3-dimensions, Biosystems, vol. 44, nr 3 pp. 181-192. 1997.
136 J.A. Kaandorp and P.M.A. Sloot: A mesoscopic Model for simulating the combined effect of hydrodynamics and diffusion on nutrient driven growth processes, in F. Karsch; B. Monien and H. Satz, editors, Proceeddings of the international conference Multi-scale Phenomena and their Simulation conference, pp. 250-254. World Scientific, Singapore, 1997.
137 B.D. Kandhai; A. Koponen; A.G. Hoekstra; M. Kataja; J. Timonen and P.M.A. Sloot: Performance of a Parallel 3D Lattice Boltzmann code for simulating fluid flow, in J. Timonen, editor, International Workshop on Physics of Structurally Disordered Materials, 1997.
138 A. Koponen; M. Kataja; J. Timonen; B.D. Kandhai; A.G. Hoekstra and P.M.A. Sloot: Fluid Flow in Three-Dimensional Random Fibre Webs, CSC News, High Performance Computing and Networking in Finland, pp. 12-14. 1997.
139 B.J. Overeinder and P.M.A. Sloot: Breaking the Curse of Dynamics by Task Migration: Pilot Experiments in the Polder Metacomputer, in M.T. Bubak; J.J. Dongarra and J. Waśniewski, editors, Recent Advances in Parallel Virtual Machine and Message Passing Interface, Proceedings of the 4th European PVM/MPI Users' Group Meeting, Cracow, Poland, November 1997, in series Lecture Notes in Computer Science, vol. 1332, pp. 194-207. Springer-Verlag, Berlin, 1997.
140 J.F. de Ronde; A. Schoneveld and P.M.A. Sloot: Load Balancing by Redundant Decomposition and Mapping, Future Generation Computer Systems, vol. 12, nr 5 pp. 391-407. (P.M.A. Sloot and H. Liddell, editors), April 1997.
141 J.F. de Ronde; G.D. van Albada and P.M.A. Sloot: High Performance Simulation of Gravitational Radiation Antennas, in L.O. Hertzberger and P.M.A. Sloot, editors, High Performance Computing and Networking, in series Lecture Notes in Computer Science, vol. 1225, pp. 200-212. Springer-Verlag, April 1997.
142 J.F. de Ronde; G.D. van Albada and P.M.A. Sloot: Simulation of Gravitational Wave Detectors, Computers in Physics, vol. 11, nr 5 pp. 484-497. September 1997.
143 A. Schoneveld; J.F. de Ronde and P.M.A. Sloot: Task Allocation by Parallel Evolutionary Computing, Journal of Parallel and Distributed Computing, vol. 47, nr 1 pp. 91-97. 1997.
144 A. Schoneveld; J.F. de Ronde and P.M.A. Sloot: Preserving Locality for Optimal Parallelism in Task Allocation, in L.O. Hertzberger and P.M.A. Sloot, editors, High-Performance Computing and Networking, in series Lecture Notes in Computer Science, vol. 1225, pp. 565-574. Springer-Verlag, 1997.
145 A. Schoneveld; J.F. de Ronde and P.M.A. Sloot: On the Complexity of Task Allocation, Complexity, vol. 3, pp. 52-60. 1997.
146 P.M.A. Sloot and H. Liddell: Special Issue on High Performance Computing and Networking Europe 1996, Future Generation Computer Systems, (Guest Editorship) 1997.
147 P.M.A. Sloot and H. Liddell: Guest Editorial, High Performance Computing and Networking Europe 1996, Future Generation Computer Systems, vol. 12, 1997.
148 P.M.A. Sloot; A. Schoneveld; J.F. de Ronde and J.A. Kaandorp: Large scale simulations of complex systems Part I: conceptual framework, (SFI Working Paper: 97-07-070) Santa Fe Instute for Complex studies, number 97-07-070, 1997.
149 J.M. Voogd; P.M.A. Sloot and R. van Dantzig: Symmetries of Crystalline Arrangements in Spherical 2D Lennard-Jones Systems, in M. Blume, editor, pp. 1601. College Park, U.S.A, 1997.
150 R.G. Belleman; J.A. Kaandorp and P.M.A. Sloot: Interactive environments for the exploration of large data sets., in B.M. ter Haar Romeny; D.H.J. Epema; J.F.M. Tonino and A.A. Wolters, editors, ASCI '98, Proceedings of the fourth annual conference of the Advanced School for Computing and Imaging, Lommel, Belgium, June 9-11, 1998, pp. 264-268. Advanced School for Computing and Imaging (ASCI), 1998.
151 R.G. Belleman; J.A. Kaandorp and P.M.A. Sloot: A Virtual Environment for the Exploration of Diffusion and Flow Phenomena in Complex Geometries, Future Generation Computer Systems, vol. 14, nr 3-4 pp. 209-214. Elsevier Science Publishers B. V., Amsterdam, The Netherlands, The Netherlands, 1998. (DOI: 10.1016/S0167-739X(98)00024-7)
152 J.M. Braan; A.G. Hoekstra and P.M.A. Sloot: Prototyping an HPCNet Distance Learning Environment: Rationale and Implementation, Dept. of Comp. Sys., Univ. of Amsterdam, number CS-98-02, 1998.
153 H. Buchner; S. Kaiser; P.M.A. Sloot; M. Fuchs and K. Wassmuth: EEG/MEG Quellen Rekonstruktion - Die Funktionen von CURRY und CAUCHY-par, in T. Lehmann; V. Metzler; K. Spitzer and T. Tolxdorff, editors, Bildverarbeitung fuer die Medizin 1998: Algorithmen-Systeme-Anwendungen, pp. 455-459. Springer-Verlag, 1998. ISBN 3-540-63885-7.
154 A.W. van Halderen; B.J. Overeinder; P.M.A. Sloot; R. van Dantzig; D.H.J. Epema and M. Livny: Hierarchical Resource Management in the Polder Metacomputing Initiative, Parallel Computing, vol. 24, nr 12/13 pp. 1807-1825. November 1998.
155 A.G. Hoekstra; M.D. Grimminck and P.M.A. Sloot: Large Scale Simulations of Elastic Light Scattering by a Fast Dipole Approximation, Int. J. Mod. Phys. C, vol. 9, pp. 87-102. 1998.
156 A.G. Hoekstra and P.M.A. Sloot: A Parallel Fast Discrete Dipole Approximation for Large Scale Simulations of Elastic Light Scattering, in B.M. ter Haar Romeny; D.H.J. Epema; J.F.M. Tonino and A.A. Wolters, editors, ASCI '98, Proceedings of the fourth annual conference of the Advanced School for Computing and Imaging, Lommel, Belgium, June 9-11, 1998, pp. 73-79. Advanced School for Computing and Imaging (ASCI), 1998.
157 A.G. Hoekstra; J. Rahola and P.M.A. Sloot: Accuracy of Internal Fields in Volume Integral Equation Simulations of Light Scattering, Applied Optics, vol. 37, pp. 8482-8497. 1998.
158 A.G. Hoekstra; J. Rahola and P.M.A. Sloot: Internal Fields In Volume Integral Equation Simulations Of Light Scattering: Accuracy And Resonances, in M.I. Mishchenko; L.D. Travis and J.W. Hovenier, editors, Proceedings of Conference on Light Scattering by Nonspherical Particles: Theory, Measurements, and Applications, pp. 16-19. American Meteorological Society, 1998.
159 B.D. Kandhai; A. Koponen; A.G. Hoekstra; M. Kataja; J. Timonen and P.M.A. Sloot: Lattice Boltzmann Hydrodynamics on Parallel Systems, Computer Physics Communications, vol. 111, pp. 14-26. 1998.
160 B.D. Kandhai; D. Dubbeldam; A.G. Hoekstra and P.M.A. Sloot: Parallel Lattice-Boltzmann Simulation of Fluid Flow in Centrifugal Elutration Chambers, in P.M.A. Sloot; M.T. Bubak and L.O. Hertzberger, editors, High-Performance Computing and Networking (HPCN Europe '98), Amsterdam, The Netherlands, in series Lecture Notes in Computer Science, nr 1401 pp. 173-182. Springer-Verlag, 1998. ISBN 3-540-64443-1.
161 B.D. Kandhai; D. Dubbeldam; A.G. Hoekstra and P.M.A. Sloot: Lattice Boltzmann hydrodynamics in Centrifugal Elutriation Chambers, in B.M. ter Haar Romeny; D.H.J. Epema; J.F.M. Tonino and A.A. Wolters, editors, Proceedings of the fourth annual conference of the Advanced School for Computing and Imaging, pp. 269-274. 1998.
162 B.D. Kandhai; D.J.-E. Vidal; A.G. Hoekstra; H.C.J. Hoefsloot; P. Iedema and P.M.A. Sloot: A comparison between Lattice-Boltzmann and finite element simulations of fluid flow in Static Mixer Reactors, Int. J. Mod. Phys. C, vol. 9, pp. 1123-1128. 1998.
163 A. Koponen; B.D. Kandhai; E. Héllen; M. Alava; A.G. Hoekstra; M. Kataja; K. Niskanen; P.M.A. Sloot and J. Timonen: Permeability of three-dimensional random fibre webs, Physical Review Letters, vol. 80, pp. 716-719. 1998.
164 P.M.A. Sloot; A.D. Pimentel and L.O. Hertzberger: Design Issues for High Performance Simulation, Simulation Practice and Theory, pp. 221-242. 1998.
165 P.M.A. Sloot; M.T. Bubak and L.O. Hertzberger: Proceedings High-Performance Computing and Networking (HPCN Europe '98), Amsterdam, The Netherlands, in series Lecture Notes in Computer Science, vol. 1401, 1998.
166 G.D. van Albada; J. Clinckemaillie; A.H.L. Emmen; J. Gehring; O. Heinz; F. van der Linden; B.J. Overeinder; A. Reinefeld and P.M.A. Sloot: Dynamite - blasting obstacles to parallel cluster computing, in P.M.A. Sloot; M.T. Bubak; A.G. Hoekstra and L.O. Hertzberger, editors, High-Performance Computing and Networking (HPCN Europe '99), Amsterdam, The Netherlands, in series Lecture Notes in Computer Science, nr 1593 pp. 300-310. Springer-Verlag, Berlin, April 1999. ISBN 3-540-65821-1.
167 G.D. van Albada; J. Clinckemaillie; A.H.L. Emmen; J. Gehring; O. Heinz; F. van der Linden; B.J. Overeinder; A. Reinefeld and P.M.A. Sloot: Dynamite - blasting obstacles to parallel cluster computing, in M. Boasson; J.A. Kaandorp; J.F.M. Tonino and M.G. Vosselman, editors, Proceedings of the fifth annual conference of the Advanced School for Computing and Imaging ASCI, June 15-17, 1999, ASCI, pp. 31-37. ASCI, Delft, June 1999.
168 R.G. Belleman; J.A. Kaandorp; D. Dijkman and P.M.A. Sloot: GEOPROVE: Geometric Probes for Virtual Environments, in P.M.A. Sloot; M.T. Bubak; A.G. Hoekstra and L.O. Hertzberger, editors, High-Performance Computing and Networking (HPCN Europe '99), Amsterdam, The Netherlands, in series Lecture Notes in Computer Science, nr 1593 pp. 817-827. Springer-Verlag, Berlin, April 1999. ISBN 3-540-65821-1.
169 R.G. Belleman; J.A. Kaandorp; D. Dijkman and P.M.A. Sloot: GEOPROVE: Geometric probes for virtual environments, in M. Boasson; J.A. Kaandorp; J.F.M. Tonino and M.G. Vosselman, editors, Proceedings of the fifth annual conference of the Advanced School for Computing and Imaging ASCI, June 15-17, 1999, ASCI, pp. 38-43. ASCI, Delft, June 1999.
170 M. Bergman; G.D. van Albada; H. Simon; H. Buchner; P.M.A. Sloot and V. Friedrich: Brain activity and parallel computing, in M. Boasson; J.A. Kaandorp; J.F.M. Tonino and M.G. Vosselman, editors, Proceedings of the fifth annual conference of the Advanced School for Computing and Imaging ASCI, June 15-17, 1999, ASCI, pp. 44-45. ASCI, Delft, June 1999.
171 D. Dubbeldam; A.G. Hoekstra and P.M.A. Sloot: Computational Aspects of Multi-Species Lattice-Gas Automata, in M. Boasson; J.A. Kaandorp; J.F.M. Tonino and M.G. Vosselman, editors, Proceedings of the fifth annual conference of the Advanced School for Computing and Imaging ASCI, June 15-17, 1999, ASCI, pp. 267-273. ASCI, Delft, June 1999.
172 D. Dubbeldam; A.G. Hoekstra and P.M.A. Sloot: Computational Aspects of Multi-Species Lattice-Gas Automata, in P.M.A. Sloot; M.T. Bubak; A.G. Hoekstra and L.O. Hertzberger, editors, High-Performance Computing and Networking (HPCN Europe '99), Amsterdam, The Netherlands, in series Lecture Notes in Computer Science, nr 1593 pp. 339-349. Springer-Verlag, Berlin, April 1999. ISBN 3-540-65821-1.
173 A.G. Hoekstra; M.O. Frijlink; D. de Kanter and P.M.A. Sloot: Two New Applications of Large Scale DDA Simulations, in F. Obelleiro; J.L. Rodriguez and T. Wriedt, editors, Proceedings of the 4th Conference on Electromagnetic and Light Scattering by Nonspherical Particles: Theory and Applications, pp. 333-334. 1999.
174 B.D. Kandhai; A. Koponen; A.G. Hoekstra and P.M.A. Sloot: Iterative Momentum Relaxation for Fast Lattice-Boltzmann Simulations, in M. Boasson; J.A. Kaandorp; J.F.M. Tonino and M.G. Vosselman, editors, Proceedings of the fifth annual conference of the Advanced School for Computing and Imaging ASCI, June 15-17, 1999, ASCI, pp. 274-278. ASCI, Delft, June 1999.
175 B.D. Kandhai; A. Koponen; A.G. Hoekstra; M. Kataja; J. Timonen and P.M.A. Sloot: Implementation aspects of 3D Lattice-BGK: Boundaries, Accuracy and a new Fast Relaxation Method, J. Comp. Phys., vol. 150, pp. 482-501. 1999.
176 B.D. Kandhai; D.J.-E. Vidal; A.G. Hoekstra; H.C.J. Hoefsloot; P. Iedema and P.M.A. Sloot: Lattice-Boltzmann and finite element simulations of fluid flow in a SMRX mixer, Int. J. Numer. Meth. Fluids, vol. 31, pp. 1019-1033. 1999.
177 B.D. Kandhai; A. Koponen; A.G. Hoekstra and P.M.A. Sloot: Iterative Momentum Relaxation for Fast Lattice-Boltzmann Simulations, in P.M.A. Sloot; M.T. Bubak; A.G. Hoekstra and L.O. Hertzberger, editors, High-Performance Computing and Networking (HPCN Europe '99), Amsterdam, The Netherlands, in series Lecture Notes in Computer Science, nr 1593 pp. 311-318. Springer-Verlag, Berlin, April 1999. ISBN 3-540-65821-1.
178 R.M.H. Merks; J.A. Kaandorp and P.M.A. Sloot: The interplay of hydrodynamics and genetic regulation in the morphogenesis of sponges and stony corals: pilot studies, in Theory and Mathematics in Biology and Medicine: Abstracts, European Society for Mathematical and Theoretical Biology (ESMTB) and Society for Mathematical Biology (SMB), pp. 345. 1999.
179 B.J. Overeinder and P.M.A. Sloot: Extensions to Time Warp Parallel Simulation for Spatially Decomposed Applications, in M. Boasson; J.A. Kaandorp; J.F.M. Tonino and M.G. Vosselman, editors, Proceedings of the fifth annual conference of the Advanced School for Computing and Imaging ASCI, June 15-17, 1999, ASCI, pp. 118-124. ASCI, Delft, June 1999.
180 B.J. Overeinder and P.M.A. Sloot: Extensions to Time Warp Parallel Simulation for Spatial Decomposed Applications, in D. Al-Dabass and R. Cheng, editors, Proceedings of the Fourth United Kingdom Simulation Society Conference (UKSim 99), pp. 67-73. Cambridge, UK, April 1999.
181 A. Schoneveld; M. Lees; E. Karyadi and P.M.A. Sloot: Dynamic Load Balancing in Parallel Finite Element Simulations, in M. Boasson; J.A. Kaandorp; J.F.M. Tonino and M.G. Vosselman, editors, Proceedings of the fifth annual conference of the Advanced School for Computing and Imaging ASCI, June 15-17, 1999, ASCI, pp. 429-434. ASCI, Delft, June 1999.
182 A. Schoneveld; M. Lees; E. Karyadi and P.M.A. Sloot: Dynamic Load Balancing in Parallel Finite Element Simulations, in P.M.A. Sloot; M.T. Bubak; A.G. Hoekstra and L.O. Hertzberger, editors, High-Performance Computing and Networking (HPCN Europe '99), Amsterdam, The Netherlands, in series Lecture Notes in Computer Science, nr 1593 pp. 409-419. Springer-Verlag, Berlin, April 1999. ISBN 3-540-65821-1.
183 P.M.A. Sloot and B.J. Overeinder: Time Warped Automata: Parallel Discrete Event Simulation of Asynchronous CA's, in R. Wyrzykowski; B. Mochnacki; H. Piech and J. Szopa, editors, Proceedings of the Third International Conference on Parallel Processing and Applied Mathematics, Kazimierz Dolny, Poland, 14-17 september 1999, pp. 43-62. Technical University of Czestochowa, 1999. ISBN 83-911994-0-1.
184 P.M.A. Sloot: High Performance Simulation with Cellular Automata, in N. Piskunov, editor, Proceedings of HiPer'99, Tromso, Norway, June 27-30 1999, pp. 169-207. Computer Centre University of Tromso, Tromso, June 1999. ISBN 82-90456-99-9.
185 P.M.A. Sloot: De som der delen - inaugural address, (Feb. 18, 1999, in Dutch) February 1999. ISBN 90 5629 084 3.
186 P.M.A. Sloot; M.T. Bubak; A.G. Hoekstra and L.O. Hertzberger: Proceedings High-Performance Computing and Networking (HPCN Europe '99), Amsterdam, The Netherlands, in series Lecture Notes in Computer Science, vol. 1593, 1999.
187 P.M.A. Sloot; J.A. Kaandorp; A.G. Hoekstra and B.J. Overeinder: Distributed Simulation with Cellular Automata: Architecture and Applications, in J. Pavelka; G. Tel and M. Bartosek, editors, SOFSEM'99 Theory and Practice of Informatics, Proceedings of 26th Seminar on Current Trends, in Theory and Practice of Informatics, Milovy, Czech Republic, November 27 - December 4, in series Lecture Notes on Computer Science, nr 1725 pp. 203-249. Springer-Verlag, 1999. ISBN 3-540-66694-X.
188 P.F. Spinnato; G.D. van Albada and P.M.A. Sloot: Performance Modelling of Hybrid Parallel Systems, in Proceedings of the TUG99 Meeting, Barcelona, Spain, Sept 1999, 1999.
189 D. Talia and P.M.A. Sloot: Special Issue on Cellular Automata, Future Generation Computer Systems, (Guest Editorship) December 1999.
190 D. Talia and P.M.A. Sloot: Cellular Automata: Promise and Prospects in Computational Science, Future Generation Computer Systems, vol. 16, nr 2-3 pp. v-vii. December 1999.
191 H.E. Bal; R.A.F. Bhoedjang; R.F.H. Hofman; C.J.H. Jacobs; T. Kielmann; J. Maassen; R. van Nieuwpoort; J. Romein; L. Renambot; T. Rühl; R. Veldema; K. Verstoep; A. Baggio; G. Ballintijn; I. Kuz; G. Pierre; M.R. van Steen; A.S. Tanenbaum; G. Doornbos; D. Germans; H.J.W. Spoelder; E.-J. Baerends; S. van Gisbergen; H. Afsarmanesh; G.D. van Albada; A.S.Z. Belloum; D. Dubbeldam; Z.W. Hendrikse; L.O. Hertzberger; A.G. Hoekstra; K.A. Iskra; B.D. Kandhai; D.C. Koelma; F. van der Linden; B.J. Overeinder; P.M.A. Sloot; P.F. Spinnato; D.H.J. Epema; A. van Gemund; P.P. Jonker; A. Radulescu; C. van Reeuwijk; H.J. Sips; P.M.W. Knijnenburg; M. Lew; F. Sluiter; L. Wolters; H. Blom and A.J. van der Steen: The Distributed ASCI supercomputer project, Operating Systems Review, vol. 34, nr 4 pp. 76-96. Association for Computing Machinery, Special Interest Group on Operating Systems, October 2000.
192 R.G. Belleman and P.M.A. Sloot: The Design of Dynamic Exploration Environments for Computational Steering Simulations, in M.T. Bubak; J. Mościnski and M. Noga, editors, Proceedings of the SGI Users' Conference 2000, pp. 57-74. Academic Computer Centre CYFRONET AGH, Krakow, Poland, October 2000. ISBN 83-902363-9-7.
193 R.G. Belleman; Z. Zhao; G.D. van Albada and P.M.A. Sloot: Design considerations for the construction of immersive dynamic exploration environments, in L.J. van Vliet; J.W.J. Heijnsdijk; T. Kielmann and P.M.W. Knijnenburg, editors, ASCI 2000, Proceedings of the sixth annual conference of the Advanced School for Computing and Imaging, pp. 195-201. ASCI, Delft, June 2000. ISBN 90-803086-5-x.
194 R. Blaak and P.M.A. Sloot: Lattice dependence of reaction-diffusion in lattice Boltzmann modelling, Computer Physics Communications, vol. 129, pp. 256-266. Elsevier Science B.V., 2000.
195 M.T. Bubak; D. Zbik; G.D. van Albada; K.A. Iskra and P.M.A. Sloot: Portable Library of Migratable Sockets, in M.T. Bubak; J. Mościnski and M. Noga, editors, Proceedings of the SGI Users' Conference 2000, pp. 175-184. Academic Computer Centre CYFRONET AGH, Krakow, Poland, October 2000. ISBN 83-902363-9-7.
196 M.T. Bubak; W. Funika; D. Zbik; G.D. van Albada; K.A. Iskra; P.M.A. Sloot; R. Wismüller and K. Sowa-Pieklo: Performance Measurement, Debugging and Load Balancing for Metacomputing, in ISThmus 2000, Research and Development for the Information Society, Conference Proceedings, pp. 409-418. Instytut Informatyki, Politechnika Poznanska, Poznan, 2000. ISBN 83-913639-0-2.
197 D.S. Clague; B.D. Kandhai; R. Zhang and P.M.A. Sloot: On the Hydraulic Permeability of (Un)Bounded Fibrous Media Using the Lattice-Boltzmann Method, Phys. Rev. E, vol. 61, nr 1 pp. 616-625. 2000.
198 D. Dubbeldam; A.G. Hoekstra and P.M.A. Sloot: Dynamic Structure Factor in Single and Two-Species Thermal GBL Lattice Gas, Computer Physics Communications, vol. 129, pp. 13-20. Elsevier Science B.V., 2000.
199 A.G. Hoekstra; M.O. Frijlink and P.M.A. Sloot: Calculation of the radiation forces on each dipole in the discrete dipole approximation, in G. Videen; Q. Fu and P. Chylek, editors, Light Scattering by Nonspherical Particles: Halifax Contributions, pp. 237-240. Army Research Laboratory, Adelphi, USA, 2000. ISBN 0-9702316-0-1.
200 A.G. Hoekstra and P.M.A. Sloot: Distributed Particle Simulation of Flow in Complex Geometries, in M. Ingber; H. Powers and C.A. Brebbia, editors, High Performance Computing in Engineering VI, pp. 371-380. WIT Press, Southampton, 2000.
201 A.G. Hoekstra and P.M.A. Sloot: Biophysical and Biomedical Applications of Non-Spherical Scattering, in M.I. Mishchenko; J.W. Hovenier and L.D. Travis, editors, Light Scattering by Nonspherical Particles, Theory, Measurements, and Applications, pp. 585-602. Academic Press, San Diego, San Francisco, New York, Boston, London, Sydney, Tokyo, 2000. ISBN: 0-12-498660-9.
202 K.A. Iskra; Z.W. Hendrikse; G.D. van Albada; B.J. Overeinder; P.M.A. Sloot and J. Gehring: Experiments with migration of message passing tasks, in R. Buyya and M. Baker, editors, Grid Computing - GRID 2000: The First IEEE/ACM International Workshop, Bangalore, India, in series Lecture Notes in Computer Science, vol. 1971, pp. 203-213. Springer-Verlag, December 2000.
203 K.A. Iskra; Z.W. Hendrikse; G.D. van Albada; B.J. Overeinder and P.M.A. Sloot: Performance Measurements on Dynamite/DPVM, in J.J. Dongarra; P. Kacsuk and N. Podhorszki, editors, Recent Advances in PVM and MPI. 7th European PVM/MPI User's Group Meeting, in series Lecture Notes in Computer Science, vol. 1908, pp. 27-38. Springer-Verlag, September 2000.
204 K.A. Iskra; Z.W. Hendrikse; G.D. van Albada; B.J. Overeinder and P.M.A. Sloot: Dynamic Migration of PVM Tasks, in L.J. van Vliet; J.W.J. Heijnsdijk; T. Kielmann and P.M.W. Knijnenburg, editors, ASCI 2000, Proceedings of the sixth annual conference of the Advanced School for Computing and Imaging, pp. 206-212. ASCI, Delft, June 2000. ISBN 90-803086-5-x.
205 K.A. Iskra; F. van der Linden; Z.W. Hendrikse; B.J. Overeinder; G.D. van Albada and P.M.A. Sloot: The implementation of Dynamite - an environment for migrating PVM tasks, Operating Systems Review, vol. 34, nr 3 pp. 40-55. Association for Computing Machinery, Special Interest Group on Operating Systems, July 2000.
206 K.A. Iskra; Z.W. Hendrikse; G.D. van Albada; B.J. Overeinder and P.M.A. Sloot: Experiments with Migration of PVM Tasks, in ISThmus 2000, Research and Development for the Information Society, Conference Proceedings, pp. 295-304. Instytut Informatyki, Politechnika Poznanska, Poznan, 2000. ISBN 83-913639-0-2.
207 J.A. Kaandorp and P.M.A. Sloot: Growth and Form of Sponges and Corals in a Moving Fluid, in A. Carbone; M. Gromov and P. Prusinkiewicz, editors, Pattern Formation in Biology, Vision and Dynamics, pp. 24-41. World Scientific, 2000. ISBN 9810237928.
208 B.D. Kandhai; W. Soll; S. Chen; A.G. Hoekstra and P.M.A. Sloot: Finite-Difference Lattice-BGK Methods on Nested Grids, Computer Physics Communications, vol. 129, pp. 100-109. 2000.
209 J. Santoso; G.D. van Albada; B.A.A. Nazief and P.M.A. Sloot: Simulating Job Scheduling for Clusters of Workstations, in M.T. Bubak; H. Afsarmanesh; R.D. Williams and L.O. Hertzberger, editors, Proceedings of the HPCN2000 Conference, Amsterdam, May 2000, in series Lecture Notes in Computer Science, vol. 1823, pp. 395-406. Springer-Verlag, 2000. ISBN 0302-9743.
210 J. Santoso; G.D. van Albada; B.A.A. Nazief and P.M.A. Sloot: Hierarchical Job Scheduling for Clusters of Workstations, in L.J. van Vliet; J.W.J. Heijnsdijk; T. Kielmann and P.M.W. Knijnenburg, editors, ASCI 2000, Proceedings of the sixth annual conference of the Advanced School for Computing and Imaging, pp. 99-105. ASCI, Delft, June 2000. ISBN 90-803086-5-x.
211 A. Schoneveld; P.M.A. Sloot; M. Lees and E. Karyadi: A Framework for Dynamic Load Balancing: A Case Study on Explosive Containment Simulation, Parallel Computing, vol. 26, pp. 737-751. 2000.
212 P.M.A. Sloot: Simulation and Visualisation in Medical Diagnosis: Perspectives and Computational Requirements, in A. Marsh; L. Grandinetti and T. Kauranne, editors, Advanced Infrastructures for Future Healthcare, pp. 275-282. IOS Press, 2000.
213 P.F. Spinnato; G.D. van Albada and P.M.A. Sloot: Performance Analysis of Parallel N-body Codes, in L.J. van Vliet; J.W.J. Heijnsdijk; T. Kielmann and P.M.W. Knijnenburg, editors, ASCI 2000, Proceedings of the sixth annual conference of the Advanced School for Computing and Imaging, pp. 213-220. ASCI, Delft, June 2000. ISBN 90-803086-5-x.
214 P.F. Spinnato; G.D. van Albada and P.M.A. Sloot: Performance Modelling of Hybrid Architectures, in U. Barberis et al., editor, SIMAI 2000, Sommari - Abstracts, pp. 73-74. Società Italiana di Matematica Applicata e Industriale, Rome, June 2000.
215 P.F. Spinnato; G.D. van Albada and P.M.A. Sloot: Performance Analysis of Parallel N-Body Codes, in M.T. Bubak; H. Afsarmanesh; R.D. Williams and L.O. Hertzberger, editors, Proceedings of the HPCN2000 Conference, Amsterdam, May 2000, in series Lecture Notes in Computer Science, vol. 1823, pp. 249-260. Springer-Verlag, 2000. ISBN 0302-9743.
216 A.M.M. Artoli; A.G. Hoekstra and P.M.A. Sloot: Time dependent flow in a rigid tube using the Lattice Boltzmann Method, in J.P. Boonand; P.V. Coveney and S. Succi, editors, International Conference on Discrete Simulation of Fluid Dynamics, (abstract) in series Europhysics Conference Abstracts, vol. 25H, pp. 3. 2001.
217 A.M.M. Artoli; B.D. Kandhai; H.C.J. Hoefsloot; A.G. Hoekstra and P.M.A. Sloot: Shear Stress in Lattice Boltzmann Simulations, in F. Hossfeld and K. Binder, editors, Europhysics Conference on Computational Physics. Aachen, Germany, 5-8 September 2001. Book of Abstracts., (abstract) John von Neumann Institute for Computing, in series Publication Series of the John von Neumann Institute for Computing, vol. 8, pp. A127. 2001.
218 R.G. Belleman and P.M.A. Sloot: Simulated vascular reconstruction in a virtual operating theatre, in H.U. Lemke; M.W. Vannier; K. Inamura; A.G. Farman and K.Doi, editors, Computer Assisted Radiology and Surgery (Excerpta Medica, International Congress Series 1230), pp. 938-944. Elsevier Science B.V., Berlin, Germany, June 2001.
219 M.T. Bubak; D. Zbik; G.D. van Albada; K.A. Iskra and P.M.A. Sloot: Migratable Sockets for Dynamic Load Balancing, in L.O. Hertzberger; A.G. Hoekstra and R.D. Williams, editors, Proceedings High-Performance Computing and Networking (HPCN Europe 2001), Amsterdam, The Netherlands, in series Lecture Notes in Computer Science, vol. 2110, pp. 23-31. Springer-Verlag, 2001. ISBN 3-540-42293-5.
220 A.G. Hoekstra and P.M.A. Sloot: Wall effects on density fluctuations in the GBL thermal lattice gas automaton, Computer Physics Communications, vol. 142, nr 1-3 pp. 151-154. December 2001.
221 A.G. Hoekstra; M.O. Frijlink; L.B.F.M. Waters and P.M.A. Sloot: Radiation Forces in the Discrete Dipole Approximation, Journal of the Optical Society of America A, vol. 18, nr 8 pp. 1944-1953. August 2001.
222 J.A. Kaandorp and P.M.A. Sloot: Morphological Models of Radiate Accretive Growth and the Influence of Hydrodynamics, Journal of theoretical Biology, vol. 209, nr 3 pp. 257-274. 2001.
223 B.D. Kandhai; A. Koponen; A.G. Hoekstra and P.M.A. Sloot: Iterative momentum relaxation for fast lattice-Boltzmann simulations, Future Generation Computer Systems, vol. 18, nr 1 pp. 89-96. September 2001. ISSN 0167-739X.
224 R.M.H. Merks; A.G. Hoekstra and P.M.A. Sloot: Validation of the Lowe-Frenkel tracer dispersion method in the lattice Boltzmann method, in F. Hossfeld and K. Binder, editors, Europhysics Conference on Computational Physics. Aachen, Germany, 5-8 September 2001. Book of Abstracts., (abstract) John von Neumann Institute for Computing, in series Publication Series of the John von Neumann Institute for Computing, vol. 8, pp. A140. 2001.
225 R.M.H. Merks; A.G. Hoekstra and P.M.A. Sloot: Validation of the Lowe-Frenkel tracer dispersion method in the lattice Boltzmann method, in R.L. Lagendijk; J.W.J. Heijnsdijk; A.D. Pimentel and M.H.F. Wilkinson, editors, Proceedings of the 7th annual conference of the Advanced School for Computing and Imaging, pp. 137-141. ASCI, May 2001. ISBN 90-803086-6-8.
226 B.J. Overeinder; A. Schoneveld and P.M.A. Sloot: Spatio-Temporal Correlations and Rollback Distributions in Optimistic Simulations, in Proceedings of the 15th Workshop on Parallel and Distributed Simulation, pp. 145-152. IEEE Computer Society, Lake Arrowhead, CA, May 2001. ISBN 0-7695-1104-X.
227 B.J. Overeinder; A. Schoneveld and P.M.A. Sloot: Spatio-Temporal Correlations and Rollback Distributions in Optimistic Simulations, in R.L. Lagendijk; J.W.J. Heijnsdijk; A.D. Pimentel and M.H.F. Wilkinson, editors, Proceedings of the 7th annual conference of the Advanced School for Computing and Imaging, Proceedings of the 7th annual conference of the Advanced School for computing and Imaging, pp. 391-398. ASCI, May 2001. ISBN 90-803086-6-8.
228 B.J. Overeinder; A. Schoneveld and P.M.A. Sloot: Self-Organized Criticality in Optimistic Simulation of Correlated Systems, Parallel and Distributed Computing Practices, (Special Issue on Parallel and Distributed Discrete Event Simulation) vol. 4, nr 1 pp. 61-75. 2001.
229 J. Santoso; G.D. van Albada; P.M.A. Sloot and B.A.A. Nazief: Simulation of Hierarchical Resource Management for Meta-computing Systems, International Journal of Foundations of Computer Science (IJFCS), vol. 12, nr 5 pp. 629-643. World Scientific Publishing Company, October 2001.
230 P.M.A. Sloot and A.G. Hoekstra: Cellular Automata as a Mesoscopic Approach to Model and simulate Complex Systems, in V.N. Alexandrov; J.J. Dongarra; B.A. Juliano; R.S. Renner and C.J.K. Tan, editors, Proceedings of the 2001 International Conference on Computational Science ICCS 2001, in series Lecture Notes in Computer Science, vol. 2074 (II), pp. 518-527. Springer Verlag, Heidelberg, New York, May 2001. ISBN: 3-540-42233-1.
231 P.M.A. Sloot; J.A. Kaandorp; A.G. Hoekstra and B.J. Overeinder: Distributed Cellular Automata: Large Scale Simulation of Natural Phenomena, in A.Y. Zomaya; F. Ercal and S. Olariu, editors, Solutions to Parallel and Distributed Computing Problems: Lessons from Biological Sciences, pp. 1-46. Computer Centre University of Tromso, 2001.
232 P.M.A. Sloot; P.F. Spinnato and G.D. van Albada: N-body Simulation on Hybrid Architectures, in V.N. Alexandrov; J.J. Dongarra; B.A. Juliano; R.S. Renner and C.J.K. Tan, editors, Proceedings of the 2001 International Conference on Computational Science ICCS 2001, in series Lecture Notes in Computer Science, vol. 2074 (II), pp. 883-892. Springer Verlag, May 2001. ISBN: 3-540-42233-1.
233 P.M.A. Sloot; B.J. Overeinder and A. Schoneveld: Self-organized criticality in simulated correlated systems, Computer Physics Communications, vol. 142, nr 1-3 pp. 76-81. December 2001.
234 P.M.A. Sloot and B. Chopard: Modeling Fluid Flow using Lattice Gases and the Lattice Boltzmann Model, Chapter 4.3, in J.A. Kaandorp and J.E. Kübler, editors, The algorithmic beauty of seaweeds, sponges and corals, pp. 99-108. Springer-Verlag, Heidelberg, New York, 2001. ISBN 354067700.
235 P.F. Spinnato; G.D. van Albada and P.M.A. Sloot: A Simulator for Parallel Hybrid Computer Systems, in R.L. Lagendijk; J.W.J. Heijnsdijk; A.D. Pimentel and M.H.F. Wilkinson, editors, Proceedings of the 7th annual conference of the Advanced School for Computing and Imaging, pp. 210-219. ASCI, May 2001. ISBN 90-803086-6-8.
236 P.F. Spinnato; G.D. van Albada and P.M.A. Sloot: Performance prediction of N-body simulations on a hybrid architecture, Computer Physics Communications, vol. 139, pp. 34-44. 2001.
237 P.F. Spinnato; G.D. van Albada and P.M.A. Sloot: Performance of N-body Codes on Hybrid Machines, Future Generation Computer Systems, vol. 17, pp. 951-959. 2001.
238 A.H. Weerts; B.D. Kandhai; W. Bouten and P.M.A. Sloot: Tortuosity of an Unsaturated Sandy Soil Estimated using Gas Diffusion and Bulk Soil Electrical Conductivity: Comparing Analogy-based Models and Lattice-Boltzmann Simulations, Soil Science Society of America Journal, vol. 65, nr 6 pp. 1577-1584. December 2001.
239 Z. Zhao; R.G. Belleman; G.D. van Albada and P.M.A. Sloot: System integration for interactive simulation systems using intelligent agents, in R.L. Lagendijk; J.W.J. Heijnsdijk; A.D. Pimentel and M.H.F. Wilkinson, editors, Proceedings of the 7th annual conference of the Advanced School for Computing and Imaging, pp. 399-406. ASCI, May 2001. ISBN 90-803086-6-8.
240 H. Afsarmanesh; R.G. Belleman; A.S.Z. Belloum; A. Benabdelkader; J.F.J. van den Brand; G.B. Eijkel; A. Frenkel; C. Garita; D.L. Groep; R.M.A. Heeren; Z.W. Hendrikse; L.O. Hertzberger; J.A. Kaandorp; E.C. Kaletas; V.V. Korkhov; C.T.A.M. de Laat; P.M.A. Sloot; D. Vasunin; A. Visser and H.H. Yakali: VLAM-G: A Grid-based virtual laboratory, Scientific Programming, (Special issue on Grid Computing) vol. 10, nr 2 pp. 173-181. (R.H. Perrott and B.K. Szymanski, editors), IOS Press, 2002. ISSN 1058-9244.
241 G.D. van Albada and P.M.A. Sloot: Surfing the Grid - Dynamic Task Migration in the Polder Metacomputer Project, in Proceedings of the 9th European PVM/MPI Users' Group Meeting on Recent Advances in Parallel Virtual Machine and Message Passing Interface, pp. 4-5. Springer-Verlag, London, UK, 2002. 3-540-44296-0.
242 A.M.M. Artoli; A.G. Hoekstra and P.M.A. Sloot: 3D Pulsatile flow with the Lattice Boltzmann BGK Method, International Journal of Modern Physics C, vol. 13, nr 8 pp. 1119-1134. October 2002.
243 A.M.M. Artoli; A.G. Hoekstra and P.M.A. Sloot: Accuracy of 2D pulsatile flow in the lattice Boltzmann BGK method, in P.M.A. Sloot; C.J.K. Tan; J.J. Dongarra and A.G. Hoekstra, editors, Computational Science - ICCS 2002, Proceedings Part I, in series Lecture Notes in Computer Science, vol. 2329, pp. 361-370. Springer Verlag, April 2002. ISBN 3-54043591-3.
244 R.G. Belleman and P.M.A. Sloot: Dynamic Exploration Environments, in J. Meij, editor, Dealing with the data flood (mining data, text and multimedia) (STT 65), pp. 771-787. STT/Beweton, The Hague, the Netherlands, 2002. ISBN 90-804496-6-0.
245 M.T. Bubak; D. Zbik; G.D. van Albada; K.A. Iskra and P.M.A. Sloot: Portable Library of Migratable Sockets, Scientific Programming, vol. 9, nr apr-01 pp. 211-222. IOS Press, Amsterdam, The Netherlands, 2002. ISSN 1058-9244.
246 R.G. Ghulghazaryan; N.S. Ananikian and P.M.A. Sloot: Yang-Lee zeros of the Q-state Potts model on recursive lattices, Physical Review E, vol. 66, nr 46110 pp. 1-9. 2002. (DOI: 10.1103/PhysRevE.66.046110)
247 K.A. Iskra; G.D. van Albada and P.M.A. Sloot: Rollbacks in Time Warp - Analysis and Modelling, in E.F. Deprettere; A.S.Z. Belloum; J.W.J. Heijnsdijk and F. van der Stappen, editors, ASCI 2002, Proceedings of the eighth annual conference of the Advanced School for Computing and Imaging, pp. 88-94. ASCI, Delft, June 2002. ISBN 90-803086-7-6.
248 K.A. Iskra; R.G. Belleman; G.D. van Albada; J. Santoso; P.M.A. Sloot; H.E. Bal; H.J.W. Spoelder and M.T. Bubak: The Polder Computing Environment, a system for interactive distributed simulation, Concurrency and Computation: Practice and Experience, (Special Issue on Grid Computing Environments) vol. 14, pp. 1313-1335. John Wiley and Sons, 2002.
249 B.D. Kandhai; U. Tallarek; D. Hlushkou; A.G. Hoekstra; P.M.A. Sloot and H. van As: Numerical simulation and measurement of liquid hold-up in biporous media containing discrete stagnant zones, Philosophical Transactions: Mathematical, Physical & Engineering Sciences, vol. 360, nr 1792 pp. 521-534. The Royal Society, 2002.
250 B.D. Kandhai; D. Hlushkou; A.G. Hoekstra; P.M.A. Sloot; H. van As and U. Tallarek: Influence of Stagnant Zones on Transient and Asymptotic Dispersion in Macroscopically Homogeneous Porous Media, Physical Review letters, vol. 88, nr 23 pp. 234501:1-4. 2002.
251 V.V. Krzhizhanovskaya; M.A. Zatevakhin; A.A. Ignatiev; Y.E. Gorbachev and P.M.A. Sloot: Distributed Simulation of Silicon-Based Film Growth, in R. Wyrzykowski; J.J. Dongarra; M. Paprzycki and J. Waśniewski, editors, Parallel Processing and Applied Mathematics, 4th International Conference, PPAM 2001, Naleczow, Poland, in series Lecture Notes in Computer Science, vol. 2328, pp. 879-887. Springer Verlag, Berlin-Heidelberg, 2002. ISBN 3-540-43792-4; ISSN 0302-9743. (DOI: 10.1007/3-540-48086-2)
252 R.M.H. Merks; A.G. Hoekstra and P.M.A. Sloot: The moment propagation method for advection-diffusion in the lattice Boltzmann method: validation and Péclet number limits, Journal of Computational Physics, vol. 183, pp. 563-576. Academic Press Professional, Inc., San Diego, CA, USA, 2002. ISSN 0021-9991. (DOI: 10.1006/jcph.2002.7209)
253 R.M.H. Merks; A.G. Hoekstra; J.A. Kaandorp and P.M.A. Sloot: Branching and compactification in a model of coral growth: a critical reinvestigation of the effect of hydrodynamics, in ESMTB2002: 5th conference of the European Society of the Mathematical and Theoretical Biology, book of abstracts, (abstract) European Society of Mathematical and Theoretical Biology, pp. 254. Milano, Italy, July 2002.
254 R.M.H. Merks; A.G. Hoekstra; J.A. Kaandorp and P.M.A. Sloot: Spontaneous branching in a polyp oriented model of stony coral growth, in P.M.A. Sloot; C.J.K. Tan; J.J. Dongarra and A.G. Hoekstra, editors, Computational Science - ICCS 2002, Proceedings Part I, in series Lecture Notes in Computer Science, vol. 2329, pp. 88-96. Springer Verlag, April 2002. ISBN 3-54043591-3.
255 J. Santoso; G.D. van Albada; T. Basaruddin and P.M.A. Sloot: A Simulation Environment for Job Scheduling on Distributed Systems, in P.M.A. Sloot; C.J.K. Tan; J.J. Dongarra and A.G. Hoekstra, editors, Computational Science - ICCS 2002, Proceedings Part I, in series Lecture Notes in Computer Science, vol. 2329, pp. 653-662. Springer Verlag, April 2002. ISBN 3-54043591-3.
256 P.M.A. Sloot; C.J.K. Tan; J. Dongarra and A.G. Hoekstra: Computational Science - ICCS 2002, Proceedings Part III, in series Lecture Notes in Computer Science, vol. 2331, Springer Verlag, 2002. ISBN 3-54043594-8.
257 P.M.A. Sloot; C.J.K. Tan; J. Dongarra and A.G. Hoekstra: Computational Science - ICCS 2002, Proceedings Part I, in series Lecture Notes in Computer Science, vol. 2329, Springer Verlag, 2002. ISBN 3-54043591-3.
258 P.M.A. Sloot; C.J.K. Tan; J. Dongarra and A.G. Hoekstra: Computational Science - ICCS 2002, Proceedings Part II, in series Lecture Notes in Computer Science, vol. 2330, Springer Verlag, 2002. ISBN 3-54043593-X.
259 P.M.A. Sloot; F. Chen and C.A.B. Boucher: Cellular Automata Model of Drug Therapy for HIV Infection, in S. Bandini; B. Chopard and M. Tomassini, editors, 5th International Conference on Cellular Automata for Research and Industry, ACRI 2002, Geneva, Switzerland, October 9-11, 2002. Proceedings, in series Lecture Notes in Computer Science, vol. 2493, pp. 282-293. October 2002.
260 P.F. Spinnato; G.D. van Albada and P.M.A. Sloot: A Versatile Simulation Model for Hierarchical Treecodes, in P.M.A. Sloot; C.J.K. Tan; J.J. Dongarra and A.G. Hoekstra, editors, Computational Science - ICCS 2002, Proceedings Part I, in series Lecture Notes in Computer Science, vol. 2329, pp. 176-185. Springer Verlag, April 2002. ISBN 3-54043591-3.
261 P.F. Spinnato; G.D. van Albada and P.M.A. Sloot: Performance Modelling of Hierarchical N-body Codes Running on Hybrid Architectures, in E.F. Deprettere; A.S.Z. Belloum; J.W.J. Heijnsdijk and F. van der Stappen, editors, ASCI 2002, Proceedings of the eighth annual conference of the Advanced School for Computing and Imaging, pp. 211-218. ASCI, Delft, June 2002. ISBN 90-803086-7-6.
262 P.F. Spinnato; G.D. van Albada and P.M.A. Sloot: A Versatile Simulation Model for Hierarchical Treecodes, Institute of Computer Science, University of Amsterdam, number CS-2002-01, Institute of Computer Science, University of Amsterdam, The Netherlands, January 2002.
263 K.J. Zajac; M.T. Bubak; M. Malawski; P.M.A. Sloot and A. Tirado Ramos: A Proposal of Services For Managing Interactive Grid Applications, in M.T. Bubak; M. Noga and M. Turala, editors, Second Cracow Grid Workshop, pp. 155-163. ACC Cyfronet UMM, Cracow, Poland, December 11-14 2002.
264 Z. Zhao; R.G. Belleman; G.D. van Albada and P.M.A. Sloot: Reusability and Efficiency in Constructing Interactive Simulation Systems, in E.F. Deprettere; A.S.Z. Belloum; J.W.J. Heijnsdijk and F. van der Stappen, editors, ASCI 2002, Proceedings of the eighth annual conference of the Advanced School for Computing and Imaging, pp. 268-275. ASCI, Delft, June 2002. ISBN 90-803086-7-6.
265 Z. Zhao; R.G. Belleman; G.D. van Albada and P.M.A. Sloot: AG-IVE: an Agent based solution to constructing Interactive Simulation Systems, in P.M.A. Sloot; C.J.K. Tan; J.J. Dongarra and A.G. Hoekstra, editors, Computational Science - ICCS 2002, Proceedings Part I, in series Lecture Notes in Computer Science, vol. 2329, pp. 693-703. Springer Verlag, April 2002. ISBN 3-54043591-3.
266 Z. Zhao; R.G. Belleman; G.D. van Albada and P.M.A. Sloot: Scenario Switches and State Updates in an Agent-based Solution to Constructing Interactive Simulation Systems, in Proceedings of the Communication Networks and Distributed Systems Modeling and Simulation Conference (CNDS 2002), pp. 3-10. January 2002.
267 E.V. Zudilova and P.M.A. Sloot: A First Step to a User-Centered Approach to a Development of Adaptive Simulation-Visualization Complexes, in Proc. of the International Conference of the Systemics, Cybernetics and Informatics, pp. 104-110. Orlando, Florida, USA, July 2002.
268 E.V. Zudilova; P.M.A. Sloot and R.G. Belleman: A Multi-modal Interface for an Interactive Simulated Vascular Reconstruction System, in Fourth IEEE ICMI'02 International Conference on Multimodal Interfaces, Pittsburgh, Pennsylvania, 14-16 October 2002, pp. 313-319. IEEE Computer Society, Los Alamitos, California, USA, 2002. ISBN 0-7695-1834-6.
269 A.M.M. Artoli; A.G. Hoekstra and P.M.A. Sloot: Accelerated Lattice BGK method for unsteady simulations through Mach number annealing, International Journal of Modern Physics C, vol. 14, nr 6 pp. 835-847. 2003.
270 A.M.M. Artoli; A.G. Hoekstra and P.M.A. Sloot: Simulation of a Systolic Cycle in a Realistic Artery with the Lattice Boltzmann BGK Method, International Journal of Modern Physics B, vol. 17, nr 1&2 pp. 95-98. World Scientific Publishing Company, January 2003.
271 A.M.M. Artoli; B.D. Kandhai; H.C.J. Hoefsloot; A.G. Hoekstra and P.M.A. Sloot: Lattice Boltzmann, a Robust and Accurate Solver for Interactive Computational Hemodynamics, in P.M.A. Sloot; D. Abramson; A.V. Bogdanov; J.J. Dongarra; A.Y. Zomaya and Y.E. Gorbachev, editors, Computational Science - ICCS 2003, Melbourne, Australia and St. Petersburg, Russia, Proceedings Part I, in series Lecture Notes in Computer Science, vol. 2657, pp. 1034-1043. Springer Verlag, June 2003. ISBN 3-540-40194-6.
272 A.G. Hoekstra; J. van 't Hoff; A.M.M. Artoli and P.M.A. Sloot: Lattice BGK Simulations of Unsteady Flow in a 2D Elastic Tube, in P.M.A. Sloot; D. Abramson; A.V. Bogdanov; J.J. Dongarra; A.Y. Zomaya and Y.E. Gorbachev, editors, Computational Science - ICCS 2003, Melbourne, Australia and St. Petersburg, Russia, Proceedings Part I, in series Lecture Notes in Computer Science, vol. 2657, pp. 997-1006. Springer Verlag, June 2003. ISBN 3-540-40194-6.
273 K.A. Iskra; G.D. van Albada and P.M.A. Sloot: Time Warp Cancellation Optimisations on High Latency Networks, in S.J. Turner and S.J.E. Taylor, editors, Proceedings Seventh IEEE International Symposium on Distributed Simulation and Real Time Applications (DS-RT 2003), pp. 128-135. IEEE Computer Society, Delft, The Netherlands, October 2003.
274 J.A. Kaandorp; E.A. Koopman; P.M.A. Sloot; R.P.M. Bak; M.J.A. Vermeij and L.E.H. Lampmann: Simulation and analysis of flow patterns around the scleractinian coral Madracis mirabilis (Duchassaing and Michelotti), Phil. Trans. R. Soc. Lond. B, vol. 358 (1437), pp. 1551 - 1557. 2003.
275 I. Kiryukhin; K. Saskov; A.V. Boukhanovsky; W. Keulen; C.A.B. Boucher and P.M.A. Sloot: Stochastic Modeling of Temporal Variability of HIV-1 Population, in P.M.A. Sloot; D. Abramson; A.V. Bogdanov; J.J. Dongarra; A.Y. Zomaya and Y.E. Gorbachev, editors, Computational Science - ICCS 2003, Melbourne, Australia and St. Petersburg, Russia, Proceedings Part I, ICCS 2003, in series Lecture Notes in Computer Science, vol. 2657, pp. 125-135. Springer Verlag, June 2003. ISBN 3-540-40194-6.
276 R.M.H. Merks; A.G. Hoekstra; J.A. Kaandorp and P.M.A. Sloot: Problem Solving Environment for Modelling Stony Coral Morphogenesis, in P.M.A. Sloot; D. Abramson; A.V. Bogdanov; J.J. Dongarra; A.Y. Zomaya and Y.E. Gorbachev, editors, Computational Science - ICCS 2003, Melbourne, Australia and St. Petersburg, Russia, Proceedings Part I, ICCS 2003, in series Lecture Notes in Computer Science, vol. 2657, pp. 639-648. Springer Verlag, June 2003. ISBN 3-540-40194-6.
277 R.M.H. Merks; A.G. Hoekstra; J.A. Kaandorp and P.M.A. Sloot: Models of coral growth: Spontaneous branching, compactification and the Laplacian growth assumption, Journal of Theoretical Biology, vol. 224/2, pp. 153-166. September 2003.
278 R.M.H. Merks; A.G. Hoekstra; J.A. Kaandorp and P.M.A. Sloot: Branching and compactification in a model of coral growth: a critical reinvestigation of the effect of hydrodynamics, in V. Capasso, editor, Mathematical modelling & Computing in Biology and Medicine; 5th ESMTB Conference 2002, pp. 539-544. MIRIAM (Milan Research Centre for Industrial and Applied Mathematics), 2003.
279 R.M.H. Merks; A.G. Hoekstra; J.A. Kaandorp and P.M.A. Sloot: Diffusion Limited Growth In Laminar Flows, International Journal of Modern Physics C, vol. 14, nr 9 pp. 1171-1182. 2003.
280 P.M.A. Sloot; G.D. van Albada; E.V. Zudilova; P. Heinzlreiter; D. Kranzlmüller; H. Rosmanith and J. Volkert: Grid-based Interactive Visualisation of Medical Images, in S. Nørager, editor, Proceedings of the First European HealthGrid Conference, January, 16th-17th, 2003, pp. 57 - 66. Commission of the European Communities, Information Society Directorate-General, Brussels, Belgium, 2003.
281 P.M.A. Sloot; D. Abramson; A.V. Bogdanov; J. Dongarra; A.Y. Zomaya and Y.E. Gorbachev: Computational Science - ICCS 2003, Melbourne, Australia and St. Petersburg, Russia, Proceedings Part I, in series Lecture Notes in Computer Science, vol. 2657, Springer Verlag, Heidelberg, June 2003. ISBN 3-540-40194-6.
282 P.M.A. Sloot; D. Abramson; A.V. Bogdanov; J. Dongarra; A.Y. Zomaya and Y.E. Gorbachev: Computational Science - ICCS 2003, Melbourne, Australia and St. Petersburg, Russia, Proceedings Part II, in series Lecture Notes in Computer Science, vol. 2658, Springer Verlag, Heidelberg, June 2003. ISBN 3-540-40195-4.
283 P.M.A. Sloot; D. Abramson; A.V. Bogdanov; J. Dongarra; A.Y. Zomaya and Y.E. Gorbachev: Computational Science - ICCS 2003, Melbourne, Australia and St. Petersburg, Russia, Proceedings Part III, in series Lecture Notes in Computer Science, vol. 2659, Springer Verlag, Heidelberg, June 2003. ISBN 3-540-40196-2.
284 P.M.A. Sloot; C.A.B. Boucher; I. Kiryukhin; K. Saskov and A.V. Boukhanovsky: A grid-based problem-solving environment for biomedicine, in S. Nørager, editor, Proceedings of the First European HealthGrid Conference, January, 16th-17th, 2003, pp. 300 - 323. Commission of the European Communities, Information Society Directorate-General, Brussels, Belgium, 2003.
285 P.M.A. Sloot; D. Abramson; A.V. Bogdanov; J. Dongarra; A.Y. Zomaya and Y.E. Gorbachev: Computational Science - ICCS 2003, Melbourne, Australia and St. Petersburg, Russia, Proceedings Part IV, in series Lecture Notes in Computer Science, vol. 2660, Springer Verlag, Heidelberg, June 2003. ISBN 3-540-40197-0.
286 P.F. Spinnato; S.F. Portegies Zwart; M. Fellhauer; G.D. van Albada and P.M.A. Sloot: Tools and Techniques for N-body Simulations, in R. Capuzzo Dolcetta, editor, Proceedings of the 1st workshop on Computational Astrophysics in Italy: Methods and Tools, MemSAIt Suppl. Series, pp. 54-65. SAIt, 2003.
287 A. Tirado Ramos; K.J. Zajac; Z. Zhao; P.M.A. Sloot; G.D. van Albada and M.T. Bubak: Experimental Grid Access for Dynamic Discovery and Data Transfer in Distributed Interactive Simulation Systems, in P.M.A. Sloot; D. Abramson; A.V. Bogdanov; J.J. Dongarra; A.Y. Zomaya and Y.E. Gorbachev, editors, Computational Science - ICCS 2003, Melbourne, Australia and St. Petersburg, Russia, Proceedings Part I, in series Lecture Notes in Computer Science, vol. 2657, pp. 284-292. Springer Verlag, June 2003. ISBN 3-540-40194-6.
288 K.J. Zajac; A. Tirado Ramos; Z. Zhao; P.M.A. Sloot and M.T. Bubak: Grid Services for HLA-based Distributed Simulation Frameworks, in F. Fernández Rivera; M.T. Bubak; A. Gómez Tato and R. Doallo, editors, First European Across Grids Conference, Santiago de Compostela, Spain, pp. 147-154. Springer-Verlag, Heidelberg, February 2003. ISBN 3-540-21048-2.
289 K.J. Zajac; M.T. Bubak; M. Malawski and P.M.A. Sloot: Towards a Grid Management System for HLA-Based Interactive Simulations, in S.J. Turner and S.J.E. Taylor, editors, Proceedings Seventh IEEE International Symposium on Distributed Simulation and Real Time Applications (DS-RT 2003), pp. 4-11. IEEE Computer Society, Delft, The Netherlands, October 2003.
290 Z. Zhao; G.D. van Albada and P.M.A. Sloot: Interaction Scenario: Orchestrating Agents in a multi-agent System, in J.-P. Muller and M.-M. Seidel, editors, Proceedings of the 4th workshop on Agent-Based Simulation, pp. 155-160. Montpellier, France, April 2003. ISBN 3-936-150-25-7.
291 Z. Zhao; G.D. van Albada; A. Tirado Ramos; K.J. Zajac and P.M.A. Sloot: ISS-Studio: a prototype for a user-friendly tool for designing interactive experiments in Problem Solving Environments, in P.M.A. Sloot; D. Abramson; A.V. Bogdanov; J.J. Dongarra; A.Y. Zomaya and Y.E. Gorbachev, editors, Computational Science - ICCS 2003, Melbourne, Australia and St. Petersburg, Russia, Proceedings Part I, in series Lecture Notes in Computer Science, vol. 2657, pp. 679-688. Springer Verlag, June 2003. ISBN 3-540-40194-6.
292 E.V. Zudilova and P.M.A. Sloot: Virtual Reality and Desktop as a Combined Interaction-Visualisation Medium for a Problem-Solving Environment, in P.M.A. Sloot; D. Abramson; A.V. Bogdanov; J.J. Dongarra; A.Y. Zomaya and Y.E. Gorbachev, editors, Computational Science - ICCS 2003, Melbourne, Australia and St. Petersburg, Russia, Proceedings Part III, in series Lecture Notes in Computer Science, vol. 2659, pp. 1025-1034. Springer Verlag, June 2003. ISBN 3-540-40196-2.
293 A.M.M. Artoli; B.D. Kandhai; H.C.J. Hoefsloot; A.G. Hoekstra and P.M.A. Sloot: Lattice BGK simulations of flow in a symmetric bifurcation, Future Generation Computer Systems, vol. 20, nr 6 pp. 909-916. 2004.
294 M.T. Bubak; G.D. van Albada; P.M.A. Sloot and J. Dongarra: Computational Science - ICCS 2004: 4th International Conference, Kraków, Poland, June 6-9, 2004, Proceedings, Part II, in series Lecture Notes in Computer Science, vol. 3037, Springer Verlag, Heidelberg, June 2004. ISBN 3-540-22115-8.
295 M.T. Bubak; G.D. van Albada; P.M.A. Sloot and J. Dongarra: Computational Science - ICCS 2004: 4th International Conference, Kraków, Poland, June 6-9, 2004, Proceedings, Part I, in series Lecture Notes in Computer Science, vol. 3036, Springer Verlag, Heidelberg, June 2004. ISBN 3-540-22114-X.
296 M.T. Bubak; G.D. van Albada; P.M.A. Sloot and J. Dongarra: Computational Science - ICCS 2004: 4th International Conference, Kraków, Poland, June 6-9, 2004, Proceedings, Part IV, in series Lecture Notes in Computer Science, vol. 3039, Springer Verlag, Heidelberg, June 2004. ISBN 3-540-22129-8.
297 M.T. Bubak; G.D. van Albada; P.M.A. Sloot and J. Dongarra: Computational Science - ICCS 2004: 4th International Conference, Kraków, Poland, June 6-9, 2004, Proceedings, Part III, in series Lecture Notes in Computer Science, vol. 3038, Springer Verlag, Heidelberg, June 2004. ISBN 3-540-22116-6.
298 H.S.M. Cramer; V. Evers; E.V. Zudilova and P.M.A. Sloot: Context analysis to support development of virtual reality applications, International Journal of Virtual Reality, vol. 7, nr 3 pp. 177-186. 2004.
299 H.S.M. Cramer; V. Evers; E.V. Zudilova and P.M.A. Sloot: Usability Evaluation of a Simulated Vascular Reconstruction System, in Proceedings of the VIRART Virtual Reality Design and Evaluation Workshop 2004, (CD-ROM, Panel VI (Design methods/process and evaluation)) University of Nottingham, United Kingdom, January 2004. ISBN 0 85358 123 1.
300 D.P. Gavidia Simonetti; E.V. Zudilova and P.M.A. Sloot: A Client-Server Engine for Parallel Computation of High-Resolution Planes, in M.T. Bubak; G.D. van Albada; P.M.A. Sloot and J.J. Dongarra, editors, Computational Science - ICCS 2004: 4th International Conference, Kraków, Poland, June 6-9, 2004, Proceedings, Part III, in series Lecture Notes in Computer Science, vol. 3038, pp. 970-977. Springer Verlag, Heidelberg, June 2004. ISBN 3-540-22116-6.
301 Y.E. Gorbachev; V.V. Krzhizhanovskaya and P.M.A. Sloot: Using GRID technologies for simulation of complex physical-chemical systems, in Proceedings of the XI All-Russian conference Telematika'2004, (In Russian) XI All-Russian conference Telematika'2004, St. Petersburg, Russia, pp. 165-167. SPbSU ITMO"Informika", Moscow, St. Petersburg, Russia, June 2004.
302 A.G. Hoekstra; J. van 't Hoff; A.M.M. Artoli and P.M.A. Sloot: Unsteady flow in a 2D elastic tube with the LBGK method, Future Generation Computer Systems, vol. 20, nr 6 pp. 917-924. 2004. (DOI: 10.1016/j.future.2003.12.003)
303 K.A. Iskra; G.D. van Albada and P.M.A. Sloot: Towards Grid-aware Time Warp, in Proceedings of the 18th Workshop on Parallel and Distributed Simulation, pp. 63-70. IEEE Computer Society, Kufstein, Austria, May 2004. ISBN 0-7695-2111-8.
304 V.V. Krzhizhanovskaya; Y.E. Gorbachev and P.M.A. Sloot: A Grid-Based Problem-Solving Environment for Simulation of Plasma Enhanced Chemical Vapor Deposition, in Proceedings of the International Conference "Distributed Computing and Grid Technologies in Science and Education", pp. 262-271. JINR Dubna, Dubna, Russia, June-July 2004. ISBN 5-9530-0052-9.
305 V.V. Krzhizhanovskaya; Y.E. Gorbachev and P.M.A. Sloot: A Grid-Based Problem-Solving Environment for Simulation of Plasma Enhanced Chemical Vapor Deposition, in Book of abstracts of the International Conference "Distributed Computing and Grid Technologies in Science and Education", (abstract) pp. 89-90. JINR Dubna, Dubna, Russia, June-July 2004. ISBN 5-9530-0052-9.
306 V.V. Krzhizhanovskaya; M.A. Zatevakhin; A.A. Ignatiev; Y.E. Gorbachev; W.J. Goedheer and P.M.A. Sloot: A 3D Virtual Reactor for Simulation of Silicon-Based Film Production, in 5th International Bi-Annual Symposium on Computational Technologies for Fluid / Thermal / Chemical Systems with Industrial Applications, held in conjunction with the ASME/JSME PVP Conference, in series ASME PVP, vol. 491, nr 2 pp. 59-68. San Diego / La Jolla, California USA, July 2004. ISBN 0-7918-4686-5.
307 B. Leskes and P.M.A. Sloot: Unlearning Phenomena in Co-evolution of Non-uniform Cellular Automata, in P.M.A. Sloot; B. Chopard and A.G. Hoekstra, editors, Cellular Automata: 6th International Conference on Cellular Automata for Research and Industry, ACRI 2004, Amsterdam, The Netherlands, October 25-28, 2004, in series Lecture Notes in Computer Science, vol. 3305, pp. 172-181. Springer Verlag, Heidelberg, October 2004. ISBN: 3-540-23596-5.
308 R.M.H. Merks; A.G. Hoekstra; J.A. Kaandorp and P.M.A. Sloot: Polyp oriented modelling of coral growth, Journal of Theoretical Biology, vol. 228, nr 4 pp. 559-576. 2004.
309 K.J. Rycerz; M.T. Bubak; M. Malawski and P.M.A. Sloot: Support for Effective and Fault Tolerant Execution of HLA-Based Applications in the OGSA Framework, in M.T. Bubak; G.D. van Albada; P.M.A. Sloot and J.J. Dongarra, editors, Computational Science - ICCS 2004: 4th International Conference, Kraków, Poland, June 6-9, 2004, Proceedings, Part III, in series Lecture Notes in Computer Science, vol. 3038, pp. 848-855. Springer Verlag, Heidelberg, June 2004. ISBN 3-540-22116-6.
310 K.J. Rycerz; B. Baliś; R. Szymacha; M.T. Bubak and P.M.A. Sloot: Monitoring of HLA Grid Application Federates with OCM-G, in S.J. Turner; D. Roberts and L. Wilson, editors, Eighth IEEE International Symposium on Distributed Simulation and Real-Time Applications (DS-RT'04), pp. 125-132. IEEE, Budapest, Hungary, October 2004. ISBN 3-540-22116-6.
311 K.J. Rycerz; M.T. Bubak; M. Malawski and P.M.A. Sloot: Interactive Grid Computing: Adapting High Level Architecture-based Applications to the Grid, TASK Quarterly, Scientific Bulletin of the Academic Centre of Gdansk, vol. 8, pp. 549-559. (P. Doerffer and J. Rybicki, editors), TASK Publishing, 2004.
312 P.M.A. Sloot and A.G. Hoekstra: Virtual Vascular Surgery on the Grid, ERCIM news, October 2004.
313 P.M.A. Sloot; A. Tirado Ramos; A.G. Hoekstra and M.T. Bubak: An Interactive Grid Environment for Non-Invasive Vascular Reconstruction, in 2nd International Workshop on Biomedical Computations on the Grid (BioGrid'04), in conjunction with Fourth IEEE/ACM International Symposium on Cluster Computing and the Grid (CCGrid2004), (CD-ROM IEEE Catalog # 04EX836C) IEEE, Chicago, Illinois, USA, April 2004. ISBN 0-7803-8431-8.
314 P.M.A. Sloot; B. Chopard and A.G. Hoekstra: Cellular Automata: 6th International Conference on Cellular Automata for Research and Industry, ACRI 2004, Amsterdam, The Netherlands, October 25-28, 2004, in series Lecture Notes in Computer Science, vol. 3305, Springer Verlag, Heidelberg, October 2004. ISBN: 3-540-23596-5.
315 P.F. Spinnato; G.D. van Albada and P.M.A. Sloot: Performance Modeling of Distributed Hybrid Architectures, IEEE Transactions on Parallel and Distributed Systems, vol. 15, nr 1 pp. 81-92. January 2004.
316 A. Tirado Ramos; P.M.A. Sloot; A.G. Hoekstra and M.T. Bubak: An Integrative Approach to High-Performance Biomedical Problem Solving Environments on the Grid, Parallel Computing, (special issue on High-Performance Parallel Bio-computing) vol. 30, nr 9-10 pp. 1037-1055. (C.-H. Huang and S. Rajasekaran, editors), 2004.
317 A. Tirado Ramos; P.M.A. Sloot; A.G. Hoekstra and M.T. Bubak: An Integrative Approach to High-Performance Biomedical Problem Solving Environments on the Grid, Parallel Computing, (special issue on High-Performance Parallel Bio-computing) vol. 30, nr 9-10 pp. 1037-1055. (C.-H. Huang and S. Rajasekaran, editors), 2004.
318 K.J. Zajac; M.T. Bubak; M. Malawski and P.M.A. Sloot: Execution and Migration Management of HLA-Based Interactive Simulations on the Grid, in R. Wyrzykowski; J.J. Dongarra; M. Paprzycki and J. Waśniewski, editors, Parallel Processing and Applied Mathematics: 5th International Conference, PPAM 2003, Czestochowa, Poland, September 7-10, 2003. Revised Papers, in series Lecture Notes in Computer Science, vol. 3019, pp. 872-879. Springer-Verlag, Heidelberg, 2004. ISBN 3-540-21946-3.
319 L. Abrahamyan; J.A. Schaap; A.G. Hoekstra; D.P. Shamonin; F.M.A. Box; R.J. van der Geest; J.H.C. Reiber and P.M.A. Sloot: A Problem Solving Environment for Image-Based Computational Hemodynamics, in V.S. Sunderam; G.D. van Albada; P.M.A. Sloot and J.J. Dongarra, editors, Computational Science - ICCS 2005: 5th International Conference, Atlanta, GA, USA, Proceedings, Part I, in series Lecture Notes in Computer Science, vol. 3514, pp. 287-294. Springer, Berlin, Heidelberg, May 2005. ISBN 3-540-26032-3.
320 R.G. Belleman; P.M.A. Sloot; E.V. Zudilova-Seinstra and A. Osseyran: Simulation, visualisation, interaction and mixed reality: views of the University of Amsterdam and SARA, (Position paper at the EU workshop on Simulation, Visualisation, Interaction and Mixed Reality) 2005.
321 A.G. Hoekstra and P.M.A. Sloot: Introducing Grid Speedup Gamma: A Scalability Metric for Parallel Applications on the Grid, in P.M.A. Sloot; A.G. Hoekstra; T. Priol; A. Reinefeld and M.T. Bubak, editors, Advances in Grid Computing - EGC 2005, in series Lecture Notes in Computer Science, vol. 3470, pp. 245-249. Springer, Berlin, Heidelberg, February 14-16 2005. ISBN 3-540-26918-5.
322 K.A. Iskra; G.D. van Albada and P.M.A. Sloot: Towards Grid-Aware Time Warp, Simulation: Transactions of The Society for Modeling and Simulation International, vol. 81, nr 4 pp. 293-306. April 2005.
323 J.A. Kaandorp; P.M.A. Sloot; R.M.H. Merks; R.P.M. Bak; M.J.A. Vermeij and C. Maier: Morphogenesis of the branching reef coral Madracis mirabilis, Proc. Roy. Soc. B, vol. 272, nr 1559 pp. 127-133. January 2005.
324 V.V. Krzhizhanovskaya; P.M.A. Sloot and Y.E. Gorbachev: Grid-based Simulation of Industrial Thin Film Production, Simulation: Transactions of the Society for Modeling and Simulation International, (Special Issue on Applications of Parallel and Distributed Simulation) vol. 81, nr 1 pp. 77-85. January 2005. ISSN 0037-5497. (DOI: 10.1177/0037549705051972)
325 T.A. Kvaløy; E. Rongen; A. Tirado Ramos and P.M.A. Sloot: Automatic Composition and Selection of Semantic Web Services, in P.M.A. Sloot; A.G. Hoekstra; T. Priol; A. Reinefeld and M.T. Bubak, editors, Advances in Grid Computing - EGC 2005, in series Lecture Notes in Computer Science, vol. 3470, pp. 184-192. Springer, Berlin, Heidelberg, February 14-16 2005. ISBN 3-540-26918-5.
326 K.J. Rycerz; M.T. Bubak; M. Malawski and P.M.A. Sloot: A Framework for HLA-Based Interactive Simulations on the Grid, Simulation: Transactions of The Society for Modeling and Simulation International, (Special Issue on Applications of Parallel and Distributed Simulation) vol. 81, nr 1 pp. 67-76. April 2005.
327 K.J. Rycerz; M.T. Bubak; M. Malawski and P.M.A. Sloot: HLA Grid based support for simulation of vascular reconstruction, in S. Gorlatch and M. Danelutto, editors, TR-05-22, Proceedings of the CoreGRID Workshop "Integrated Research in Grid Computing", pp. 165-174. University of Pisa, Computer Science Department, Pisa, November 2005.
328 P.M.A. Sloot: Preface, Future Generation Computer Systems, January 2005.
329 P.M.A. Sloot: Research on Cellular Automata, (20 minute documentary) 2005.
330 P.M.A. Sloot; C.A.B. Boucher; M.T. Bubak; A.G. Hoekstra; P. Plaszczak; A. Posthumus; D.A.M.C. van de Vijver; S. Wesner and A. Tirado Ramos: VIROLAB - A Virtual Laboratory for Decision Support in Viral Diseases Treatment, in Cracow Grid Workshop 2005, (best poster award) pp. 33+1. Cracow, Poland, November 2005.
331 P.M.A. Sloot; A.V. Boukhanovsky; W. Keulen and C.A.B. Boucher: A Grid-based HIV Expert System, in Proceedings of the 5th International Symposium on Cluster Computing and Grid, CCGrid, (IEEE product number: EX1055C) IEEE, Cardiff, Wales, UK, May 2005. ISBN: 0-7803-9075-X.
332 P.M.A. Sloot; A.V. Boukhanovsky; W. Keulen; A. Tirado Ramos and C.A.B. Boucher: A Grid-based HIV Expert System, Journal of Clinical Monitoring and Computing, vol. 19, nr 4-5 October 2005. ISSN: 11387-1307.
333 P.M.A. Sloot; A.G. Hoekstra; T. Priol; A. Reinefeld and M.T. Bubak: Advances in Grid Computing - EGC 2005, in series Lecture Notes in Computer Science, vol. 3470, Springer, Berlin, Heidelberg, February 14-16 2005. ISBN 3-540-26918-5.
334 P.M.A. Sloot; J.A. Kaandorp and A.G. Hoekstra: Towards Virtual Physiological Human: Multilevel Modelling and Simulation of the Human Anatomy and Phsyiology, November 2005.
335 V.S. Sunderam; G.D. van Albada; P.M.A. Sloot and J. Dongarra: Computational Science - ICCS 2005: 5th International Conference, Atlanta, GA, USA, Proceedings, Part III, in series Lecture Notes in Computer Science, vol. 3516, Springer, Berlin, Heidelberg, May 2005. ISBN 3-540-26044-7.
336 V.S. Sunderam; G.D. van Albada; P.M.A. Sloot and J. Dongarra: Computational Science - ICCS 2005: 5th International Conference, Atlanta, GA, USA, Proceedings, Part II, in series Lecture Notes in Computer Science, vol. 3515, Springer, Berlin, Heidelberg, May 2005. ISBN 3-540-26043-9.
337 V.S. Sunderam; G.D. van Albada; P.M.A. Sloot and J. Dongarra: Computational Science - ICCS 2005: 5th International Conference, Atlanta, GA, USA, Proceedings, Part I, in series Lecture Notes in Computer Science, vol. 3514, Springer, Berlin, Heidelberg, May 2005. ISBN 3-540-26032-3.
338 A. Tirado Ramos; D.J. Groen and P.M.A. Sloot: On-line Application Performance Monitoring of Blood Flow Simulation in Computational Grid Architectures, in The 18th IEEE Symposium on Computer-Based Medical Systems, special track Grids for Biomedicine and Bioinformatics, pp. 511-516. Trinity College Dublin, Ireland, June 23-24 2005. ISBN 0769523552.
339 A. Tirado Ramos; G. Tsouloupas; M.D. Dikaiakos and P.M.A. Sloot: Grid Resource Selection by Application Benchmarking: a Computational Haemodynamics Case Study, in V.S. Sunderam; G.D. van Albada; P.M.A. Sloot and J.J. Dongarra, editors, Computational Science - ICCS 2005: 5th International Conference, Atlanta, GA, USA, Proceedings, Part I, in series Lecture Notes in Computer Science, vol. 3514, pp. 534-543. Springer, Berlin, Heidelberg, May 2005. ISBN 3-540-26032-3.
340 A. Tirado Ramos; D.P. Shamonin; R.M. Shulakov; D.J. Groen; A.G. Hoekstra; G.D. van Albada; E.V. Zudilova and P.M.A. Sloot: Interactive Problem Solving Environments on the Grid for Image-based Computational Haemodynamics, in The CrossGrid Book, (accepted 15 January 2004) The European CrossGrid Consortium, 2005.
341 A. Tirado Ramos; D.J. Groen and P.M.A. Sloot: Exploring OGSA Interoperability with LCG-based Production Grids for Biomedical Applications, in M.T. Bubak; M. Turala and K. Wiatr, editors, Cracow Grid Workshop 2005, pp. 367-374. Ekodruk, Cracow, Poland, November 2005.
342 J.M. Voogd; P.M.A. Sloot and R. van Dantzig: Equilibrium spherically curved two-dimensional Lennard-Jones systems, J. Chem. Phys., vol. 123, nr 084105 pp. 1-5. 2005. (DOI: 10.1063/1.2007707)
343 Z. Zhao; A.S.Z. Belloum; P.M.A. Sloot and L.O. Hertzberger: Agent technology and scientific workflow management in an e-Science environment, in Proceedings of the 17th IEEE International conference on Tools with Artificial Intelligence (ICTAI05), ICTAI '05, pp. 19-23. IEEE Computer Society Press, Hongkong, China, November 14th-16th 2005.
344 Z. Zhao; A.S.Z. Belloum; A. Wibisono; F. Terpstra; P.T. de Boer; P.M.A. Sloot and L.O. Hertzberger: Scientific workflow management: between generality and applicability, in Proceedings of the International Workshop on Grid and Peer-to-Peer based Workflows in conjunction with the 5th International Conference on Quality Software, pp. 357-364. IEEE Computer Society Press, Melbourne, Australia, September 19th-21st 2005.
345 Z. Zhao; A.S.Z. Belloum; H.H. Yakali; P.M.A. Sloot and L.O. Hertzberger: Dynamic Workflow in a Grid Enabled Problem Solving Environment, in Proceedings of the 5th International Conference on Computer and Information Technology (CIT2005), pp. 339-345. IEEE Computer Society Press, Shanghai, China, September 2005.
346 Z. Zhao; G.D. van Albada and P.M.A. Sloot: Agent-based flow control for HLA components, International journal of simulation transaction, special issue Agent Directed Simulation, vol. 81, nr 7 pp. 487-501. 2005.
347 Z. Zhao; G.D. van Albada and P.M.A. Sloot: Rapid Prototyping of Complex Interactive Simulation Systems, in Proceedings of the 10th IEEE International Conference on Engineering of Complex Computer Systems (ICECCS'05), pp. 366-375. IEEE Computer Society Press, Shanghai, China, June 2005.
348 Z. Zhao; A.S.Z. Belloum; P.M.A. Sloot and L.O. Hertzberger: Agent Technology and Generic Workflow Management in an e-Science Environment, in Hai Zhuge and G.C. Fox, editors, Grid and Cooperative Computing - GCC 2005: 4th International Conference, Beijing, China, in series Lecture Notes in Computer Science, vol. 3795, pp. 480-485. Springer, November 2005. ISBN 3-540-30510-6. (DOI: 10.1007/11590354_61)
349 E.V. Zudilova and P.M.A. Sloot: Bringing Combined Interaction to a Problem Solving Environment for Vascular Reconstruction, Int. J. Future Generation Computer Systems, vol. 21, nr 7 pp. 1167-1176. Elsevier Science Publishers B. V., Amsterdam, The Netherlands, The Netherlands, 2005. (DOI: 10.1016/j.future.2004.04.004)
350 E.V. Zudilova and P.M.A. Sloot: Multi-modal Interaction in Biomedicine, in Y. Cai, editor, Ambient Intelligence for Scientific Discovery, in series Lecture Notes in Artificial Intelligence, vol. 3345, pp. 184-201. Springer-Verlag, Heidelberg, 2005.
351 L. Abrahamyan; A.G. Hoekstra and P.M.A. Sloot: Choosing Optimal L-BGK Simulation Parameters for Time Harmonic Flows, in Proceedings Discrete Simulation of Fluid Dynamics DSFD2006, Geneva, Switserland, (abstract) 2006.
352 L. Abrahamyan; J.M. Bernsdorf; T. Zeiser; P. Lammers; A.G. Hoekstra and P.M.A. Sloot: MPI parallelization and performance aspects of a graph based LB flow solver, in Proceedings Discrete Simulation of Fluid Dynamics DSFD2006, Geneva, Switserland, (abstract) 2006.
353 V.N. Alexandrov; G.D. van Albada; P.M.A. Sloot and J. Dongarra: Computational Science - ICCS 2006: 6th International Conference, Reading, UK, Proceedings, Part III, in series Lecture Notes in Computer Science, vol. 3993, Springer, Berlin, Heidelberg, May 2006. ISBN 3-540-34383-3.
354 V.N. Alexandrov; G.D. van Albada; P.M.A. Sloot and J. Dongarra: Computational Science - ICCS 2006: 6th International Conference, Reading, UK, Proceedings, Part IV, in series Lecture Notes in Computer Science, vol. 3994, Springer, Berlin, Heidelberg, May 2006. ISBN 3-540-34385-7.
355 V.N. Alexandrov; G.D. van Albada; P.M.A. Sloot and J. Dongarra: Computational Science - ICCS 2006: 6th International Conference, Reading, UK, Proceedings, Part II, in series Lecture Notes in Computer Science, vol. 3992, Springer, Berlin, Heidelberg, May 2006. ISBN 3-540-34381-4.
356 V.N. Alexandrov; G.D. van Albada; P.M.A. Sloot and J. Dongarra: Computational Science - ICCS 2006: 6th International Conference, Reading, UK, Proceedings, Part I, in series Lecture Notes in Computer Science, vol. 3991, Springer, Berlin, Heidelberg, May 2006. ISBN 3-540-34379-2.
357 A.M.M. Artoli; A.G. Hoekstra and P.M.A. Sloot: Mesoscopic simulations of systolic flow in the Human abdominal aorta, Journal of Biomechanics, vol. 39, nr 5 pp. 873-884. 2006. (DOI: 10.1016/j.jbiomech.2005.01.033)
358 A.M.M. Artoli; A.G. Hoekstra and P.M.A. Sloot: Optimizing lattice Boltzmann simulations for unsteady flows, Computers & Fluids, vol. 35, nr 2 pp. 227-240. February 2006. (DOI: 10.1016/j.compfluid.2004.12.002)
359 V.V. Krzhizhanovskaya; P.M.A. Sloot and Y.E. Gorbachev: Modeling of Plasma Chemical Deposition and Degradation of Silicon Thin Films, in E.E. Gdoutos, editor, Proceedings of the 16th European Conference of Fracture, Alexandroupolis, Greece, July 3-7, 2006, (abstract) pp. 1347-1348. Springer, Alexandroupolis, Greece, 2006. ISBN-10 1-4020-4971-4.
360 V.V. Krzhizhanovskaya; V.V. Korkhov; A. Tirado Ramos; D.J. Groen; I.V. Shoshmina; I.A. Valuev; I.V. Morozov; N.V. Malyshkin; Y.E. Gorbachev and P.M.A. Sloot: Computational Engineering on the Grid: Crafting a Distributed Virtual Reactor, in P.M.A. Sloot; G.D. van Albada; M.T. Bubak and A. Trefethen, editors, 2nd IEEE International Conference on e-Science and Grid Computing, (full paper on CD) pp. 101. IEEE, Amsterdam, The Netherlands, December 2006. (DOI: 10.1109/E-SCIENCE.2006.42)
361 V.V. Krzhizhanovskaya; V.V. Korkhov and P.M.A. Sloot: Virtual Reactor: a distributed computing environment for simulation of plasma chemical processes on heterogeneous resources of the Grid, in All-Russian conference "Scientific services on the Internet: Parallel Programming Technologies", Novorossiysk, Russia, September 2006.
362 G. Lee; D. Slezak; T.H. Kim; P.M.A. Sloot; H.-K. Kim; I.S. Ko and M. Szczuka: IEEE Proceedings of the 2006 International Conference on Hybrid Information Technology, (IEEE Computer Society Order Number P2674) IEEE, November 2006. ISBN 13:978-0-7695-2674-4, ISBN 10: 0-769-2674-8.
363 R.M.H. Merks; A.G. Hoekstra; J.A. Kaandorp; P.M.A. Sloot and P. Hogeweg: Problem-Solving Environments for Biological Morphogenesis, Comput. Sci. Eng, vol. 8, nr 1 pp. 61-72. 2006. (DOI: 10.1109/MCSE.2006.11)
364 K.J. Rycerz; M.T. Bubak; M. Malawski and P.M.A. Sloot: A Grid Service for Management of Multiple HLA Federate Processes, in R. Wyrzykowski; J.J. Dongarra; N. Meyer and J. Waśniewski, editors, Parallel Processing and Applied Mathematics: 6th International Conference (PPAM) 2005, Revised selected papers, in series Lecture Notes in Computer Science, vol. 3911, pp. 699-706. Springer, 2006. ISBN: 3-540-34141-2. (DOI: 10.1007/11752578_84)
365 K.J. Rycerz; M.T. Bubak; P.M.A. Sloot and V.S. Getov: Problem solving environment for distributed interactive applications, in S. Gorlatch; M.T. Bubak and T. Priol, editors, Integrated Research in Grid Computing, Integration Workshop, pp. 129-140. Academic Computing Centre CYFRONET AGH, Krakow, Poland, October 2006. ISBN 83-915141-6-1.
366 K.J. Rycerz; M.T. Bubak; M. Malawski and P.M.A. Sloot: Grid support for HLA-based collaborative environment for vascular reconstruction, in P.M.A. Sloot; G.D. van Albada; M.T. Bubak and A. Trefethen, editors, 2nd IEEE International Conference on e-Science and Grid Computing, (Full paper on CD ROM) pp. 48+8. IEEE, 2006. ISBN 0-7695-2734-5. (DOI: 10.1109/E-SCIENCE.2006.77)
367 M. Scarpa; R.G. Belleman; P.M.A. Sloot and C.T.A.M. de Laat: Highly interactive distributed visualization, Future Generation Computer Systems, vol. 22, nr 8 pp. 896-900. May 2006. (DOI: 10.1016/j.future.2006.03.004)
368 P.M.A. Sloot; A. Tirado Ramos; I. Altintas; M.T. Bubak and C.A.B. Boucher: From Molecule to Man: Decision Support in Individualized E-Health, IEEE Computer, (Cover feature) vol. 39, nr 11 pp. 40-46. November 2006.
369 P.M.A. Sloot: Handling Complexity, (Laudation for Carl Kesselman, dr. hc.) 2006.
370 P.M.A. Sloot; G.D. van Albada; M.T. Bubak and A. Trefethen: 2nd IEEE International Conference on e-Science and Grid Computing, (CD Only) IEEE, IEEE, 12 2006. ISBN 0-7695-2734-5.
371 A. Tirado Ramos and P.M.A. Sloot: A Conceptual Grid Architecture for Interactive Biomedical Applications, in 19th IEEE International Symposium on Computer-Based Medical Systems (CBMS'06), pp. 762-767. IEEE, Salt Lake City, USA, 2006. ISBN 0-7695-2517-1.
372 J.A. Vrugt; B. Ó Nualláin; B.A. Robinson; W. Bouten; S.C. Dekker and P.M.A. Sloot: Application of parallel computing to stochastic parameter estimation in environmental models, Computers & Geosciences, vol. 32, nr 8 pp. 1139-1155. January 2006. (DOI: 10.1016/j.cageo.2005.10.015)
373 L. Axner; A.G. Hoekstra and P.M.A. Sloot: Simulating Time Harmonic Flows with the Lattice Boltzmann Method, Phys. Rev. E, pp. 036709+7. 2007.
374 L. Axner; J. Lätt; A.G. Hoekstra; B. Chopard and P.M.A. Sloot: Simulating Time Harmonic Flows with the Regularized L-BGK Method, Int. J. of Mod. Phys. C, vol. 18, nr 4 pp. 661-666. 2007.
375 M.T. Bubak; T. Gubała; M. Kasztelnik; M. Malawski; P. Nowakowski and P.M.A. Sloot: Collaborative Virtual Laboratory for e-Health, in P. Cunningham and M. Cunningham, editors, Expanding the Knowledge Economy: Issues, Applications, Case Studies, eChallenges e-2007 Conference Proceedings, pp. 537-544. IOS Press, Amsterdam, 2007. ISBN 978-1-58603-801-4 (paper), ISBN: 978-1-905824-05-2 (CD).
376 W. Dubizky; A. Schuster; P.M.A. Sloot; M. Schroeder and M. Romberg: Distributed, High-Performance and Grid Computing in Computational Biology, (Sublibrary: Lecture Notes in Bioinformatics) in series Lecture Notes in Computer Science, vol. 4360, pp. 1-190. Springer, Berlin, Heidelberg, January 2007. ISSN 0302-9743; ISBN-10 3-540-69841-8.
377 G. Ertaylan and P.M.A. Sloot: A complex automata model of HIV-1 co-receptor tropism: Understanding mutation rate pressure, in Reviews in Antiretroviral Therapy, Washington D.C., USA, December 2007.
378 A.G. Hoekstra and P.M.A. Sloot: Modelleren en Simuleren, in T.M.A. Bemelmans; M. van Keulen; R.J. Kusters and M. Looijen, editors, ICT-Zakboek, 3e druk, (in Dutch) in series PBNA Polyzakboekjes, pp. 239-255. Reed Business Information, Den Haag, 2007. ISBN 978-90-6228-671-3.
379 V.V. Krzhizhanovskaya; Y.E. Gorbachev; M.A. Zatevakhin and P.M.A. Sloot: Virtual Reactor - Computational Environment for Multidimensional Simulation of Plasma Chemical Processing, in Proceedings of the XV International Conference on Computational Mechanics and Modern Applied Software Systems, MAI, Alushta, Ukraine, May 2007.
380 J.T. Mościcki; M.T. Bubak; H.C. Lee; A. Muraru and P.M.A. Sloot: Quality of Service on the Grid with User Level Scheduling, in M.T. Bubak; M. Turala and K. Wiatr, editors, CGW'06 Proceedings, pp. 119-129. Cracow, Poland, July 2007. ISBN 83-915141-7-X.
381 S. Murtaza; A.G. Hoekstra and P.M.A. Sloot: Performance evaluation of FPGA-based Cellular Automata accelerators, in Proceedings of the Third Annual Reconfigurable Systems Summer Institute (RSSI'07), (on line proceedings) 7 pages. Reconfigurable Systems Summer Institute, National Center for Supercomputing Applications, Urbana, Illinois, 2007.
382 S. Murtaza; A.G. Hoekstra and P.M.A. Sloot: Performance Modeling of 2D Cellular Automata on FPGA, in A. van Genderen, editor, International Conference on Field Programmable Logic and Applications, FPL 2007, pp. 74-78. IEEE, Amsterdam, August 2007. ISBN: 978-1-4244-1060-6. (DOI: 10.1109/FPL.2007.4380628)
383 G. Qiu; B.D. Kandhai and P.M.A. Sloot: Understanding the complex dynamics of stock markets through cellular automata, Phys Rev E., vol. 75, pp. 046116+11. 2007. (DOI: 10.1103/PhysRevE.75.046116)
384 K.J. Rycerz; M.T. Bubak; P.M.A. Sloot and V.S. Getov: Problem Solving Environment for Distributed Interactive Applications, Institute on Grid Systems, Tools and Environments, number TR-0107, August 2007.
385 K.J. Rycerz; M.T. Bubak; M. Malawski and P.M.A. Sloot: Multiple HLA Federate Processes in Grid Environment, in M.T. Bubak; M. Turala and K. Wiatr, editors, CGW'06 Proceedings, (abstract) pp. 293-294. Cracow, Poland, July 2007. ISBN 83-915141-7-X.
386 K.J. Rycerz; A. Tirado Ramos; A. Gualandris; S.F. Portegies Zwart; M.T. Bubak and P.M.A. Sloot: Interactive N-Body Simulations On the Grid: HLA Versus MPI, International Journal of High Performance Computing Applications, (Selected papers from EuroPVM/MPI 2005 conference, Sorrento, Italy, 18-21 September 2005) vol. 21, nr 2 pp. 210-221. SAGE Publications, 2007. ISSN 1094-3420.
387 Y. Shi; G.D. van Albada; J. Dongarra and P.M.A. Sloot: Computational Science - ICCS 2007: 7th International Conference, Beijing, China, Proceedings, Part III, in series Lecture Notes in Computer Science, vol. 4489, Springer, Berlin, Heidelberg, May 2007. ISBN: 978-3-540-72587-9.
388 Y. Shi; G.D. van Albada; J. Dongarra and P.M.A. Sloot: Computational Science - ICCS 2007: 7th International Conference, Beijing, China, Proceedings, Part IV, in series Lecture Notes in Computer Science, vol. 4490, Springer, Berlin, Heidelberg, May 2007. ISBN: 978-3-540-72589-3.
389 Y. Shi; G.D. van Albada; J. Dongarra and P.M.A. Sloot: Computational Science - ICCS 2007: 7th International Conference, Beijing, China, Proceedings, Part I, in series Lecture Notes in Computer Science, vol. 4487, Springer, Berlin, Heidelberg, May 2007. ISBN: 978-3-540-72583-1.
390 Y. Shi; G.D. van Albada; J. Dongarra and P.M.A. Sloot: Computational Science - ICCS 2007: 7th International Conference, Beijing, China, Proceedings, Part II, in series Lecture Notes in Computer Science, vol. 4488, Springer, Berlin, Heidelberg, May 2007. ISBN: 978-3-540-72585-5.
391 P.M.A. Sloot; A. Tirado Ramos and M.T. Bubak: Multi-Science Decision Support for HIV Drug Resistance Treatment, in P. Cunningham and M. Cunningham, editors, Expanding the Knowledge Economy: Issues, Applications, Case Studies, eChallenges e-2007 Conference Proceedings, pp. 597-606. IOS Press, Amsterdam, 2007. ISBN 978-1-58603-801-4 (paper), ISBN: 978-1-905824-05-2 (CD).
392 P.M.A. Sloot and A.G. Hoekstra: Modeling Dynamic Systems with Cellular Automata, Chapter 21, in P.A. Fishwick, editor, Handbook of Dynamic System Modeling, pp. 1-20. Chapman & Hall/CRC, 2007. ISBN 1-58488-565-3.
393 P.M.A. Sloot; D. Frenkel; H.A. Van der Vorst; A. van Kampen; H.E. Bal; P. Klint; R.M.M. Mattheij; J. van Wijk; J. Schaye; H.-J. Langevelde; R.H. Bisseling; B. Smit; E. Valenteyn; H.J. Sips; J.B.T.M. Roerdink and K.G. Langedoen: Computational e-Science: Studying complex systems in silico. A National Coordinated Initiative. White Paper., February 2007.
394 M.T. Bubak; G.D. van Albada; J. Dongarra and P.M.A. Sloot: Computational Science - ICCS 2008: 8th International Conference, Krakow, Poland, Proceedings, Part I, in series Lecture Notes in Computer Science, vol. 5101, 1051 pages. Springer, Berlin, Heidelberg, June 2008. 978-3-540-69383-3.
395 M.T. Bubak; G.D. van Albada; J. Dongarra and P.M.A. Sloot: Computational Science - ICCS 2008: 8th International Conference, Krakow, Poland, Proceedings, Part II, in series Lecture Notes in Computer Science, vol. 5102, 745 pages. Springer, Berlin, Heidelberg, June 2008. 978-3-540-69386-4.
396 M.T. Bubak; G.D. van Albada; J. Dongarra and P.M.A. Sloot: Computational Science - ICCS 2008: 8th International Conference, Krakow, Poland, Proceedings, Part III, in series Lecture Notes in Computer Science, vol. 5103, 751 pages. Springer, Berlin, Heidelberg, June 2008. 978-3-540-69388-8.
397 G. Ertaylan and P.M.A. Sloot: A complex automata model of HIV-1 co-receptor tropism: mutation rate prediction, in M.T. Bubak; M. Turala and K. Wiatr, editors, CGW'07 proceedings, (abstract) Cracow' 07 Grid Workshop (CGW'07), Cracow, Poland, pp. 85-85. Krakow, Poland, October 2008. ISBN 978-83-915141-9-1.
398 J.L. Guisado; F. Fernández de Vega; F. Jiménez Morales; K.A. Iskra and P.M.A. Sloot: Parallel Cellular Automata-based Simulation of Laser Dynamics using Dynamic Load Balancing, in Ó. Garnica, editor, First International Workshop on Parallel Architectures and Bioinspired Algorithms, First International Workshop on Parallel Architectures and Bioinspired Algorithms (WPABA), Toronto, Canada, pp. 49-55. Universidad Complutense de Madrid, Toronto, Canada, October 2008. ISBN: 978-84-691-6512-6.
399 J.L. Guisado; F. Fernández de Vega; F. Jiménez Morales; K.A. Iskra and P.M.A. Sloot: Using cellular automata for parallel simulation of laser dynamics with dynamic load balancing, Int. J. of High Performance Systems Architecture (IJHPSA), vol. 1, nr 4 pp. 251-259. 2008. ISSN 1751-6528. (DOI: 10.1504/IJHPSA.2008.024209)
400 Z. Guo; P.M.A. Sloot and J.C. Tay: A hybrid agent-based approach for modeling microbiological systems, J. of Theor. Biology, vol. 255, nr 2 pp. 163-175. Nov. 2008. (DOI: 10.1016/j.jtbi.2008.08.008)
401 A.G. Hoekstra; S.F. Portegies Zwart; M.T. Bubak and P.M.A. Sloot: Towards Distributed Petascale Computing, Chapter 8, in D.A. Bader, editor, Petascale Computing: Algorithms and Applications, pp. 147-164. Chapman & Hall, mar 2008. ISBN: 9781584889090, ISBN 10: 1584889098.
402 C.-H. Huang; A. Konagaya; V. Lanza and P.M.A. Sloot: Introduction to the Special Section on BioGrid: Biomedical Computations on the Grid, IEEE Trans. on Inf. Techn. in Biomedicine, (Guest Editorial) vol. 12, nr 2 pp. 133-137. March 2008. (DOI: 10.1109/TITB.2008.918585)
403 V.V. Korkhov; V.V. Krzhizhanovskaya and P.M.A. Sloot: A Grid-Based Virtual Reactor: Parallel performance and adaptive load balancing, Journal of Parallel and Distributed Computing, vol. 68, nr 5 pp. 596-608. Elsevier, 2008. (DOI: 10.1016/j.jpdc.2007.08.010)
404 S. Murtaza; A.G. Hoekstra and P.M.A. Sloot: Floating point based Cellular Automata simulations using a dual FPGA-enabled system, in Proceedings of the High Performance Reconfigurable Computing Technology and Applications, pp. 1-8. IEEE, 2008. ISBN 978-1-4244-2826-7. (DOI: 10.1109/HPRCTA.2008.4745686)
405 B. Ó Nualláin; D.A.M.C. van de Vijver; C.A.B. Boucher; A. Tirado Ramos and P.M.A. Sloot: Enhanced Decision Support for HIV Drug Resistance Interpretation, in Proceedings of the 6th European HIV Drug Resistance Workshop, (abstract, in press) Budapest, March 2008.
406 K.J. Rycerz; P.M.A. Sloot and M.T. Bubak: Dynamic Interactions in HLA Component Model for Multiscale Simulations, in M.T. Bubak; G.D. van Albada; J.J. Dongarra and P.M.A. Sloot, editors, Computational Science - ICCS 2008: 8th International Conference, Krakow, Poland, Proceedings, Part II, in series Lecture Notes in Computer Science, vol. 5102, pp. 217-226. Springer, Berlin, Heidelberg, June 2008. 978-3-540-69386-4.
407 K.J. Rycerz; M.T. Bubak and P.M.A. Sloot: Using HLA and Grid for Distributed Multiscale Simulations, in R. Wyrzykowski; K. Karczewski; J.J. Dongarra and J. Waśniewski, editors, Parallel Processing and Applied Mathematics: 7th International Conference, PPAM 2007, Gdansk, Poland, September 9-12, 2007 Revised Selected Papers, 7th International Conference on Parallel Processing and Applied Mathematics (PPAM 2007), GdaÅ„sk, Poland, in series Lecture Notes in Computer Science, vol. 4967, pp. 780-787. Springer, Berlin, Heidelberg, May 2008. 978-3-540-68105-2. (DOI: 10.1007/978-3-540-68111-3)
408 K.J. Rycerz; M.T. Bubak; P.M.A. Sloot and V.S. Getov: Problem solving environment for distributed interactive applications, in S. Gorlatch; M.T. Bubak and T. Priol, editors, Achievements in European Research on Grid Systems - CoreGRID Integration Workshop 2006 (Selected Papers), CoreGRID Integration Workshop (CGIW'2006), Krakow, Poland, pp. 55-66. Springer, 2008. ISBN-13 978-0-387-72811-7.
409 K.J. Rycerz; M.T. Bubak and P.M.A. Sloot: HLA component model on the example of multiscale simulation, in M.T. Bubak; M. Turala and K. Wiatr, editors, Proceedings of Cracow'07 Grid Workshop, Oct 15-17 2007, Cracow, Poland, ACC Cyfronet AGH, pp. 272-275. Academic Computer Centre CYFRONET AGH, 2008. ISBN 978-83-915141-9-1.
410 K.J. Rycerz; M.T. Bubak and P.M.A. Sloot: HLA component based environment for distributed multiscale simulations, in T. Priol and M. Vanneschi, editors, From Grids to service and pervasive computing, CoreGRID symposium, CoreGRID Symposium 2008, Las Palmas de Gran Canaria, Spain, pp. 229-239. Springer, 2008. ISBN-13 978-0-387-09454-0.
411 K.J. Rycerz; M.T. Bubak; P.M.A. Sloot and V.S. Getov: HLA Component Based Environment for Distributed Multiscale Simulations, Institute on Grid Systems, Tools, and Environments, CoreGRID - Network of Excellence, number TR-0137, April 2008.
412 P.M.A. Sloot; S.V. Ivanov; A.V. Boukhanovsky; D.A.M.C. van de Vijver and C.A.B. Boucher: Stochastic simulation of HIV population dynamics through complex network modelling, International Journal of Computer Mathematics, vol. 85, nr 8 pp. 1175-1187. Taylor & Francis, 2008. (DOI: 10.1080/00207160701750583)
413 P.M.A. Sloot; A. Tirado Ramos; G. Ertaylan; B. Ó Nualláin; D.A.M.C. van de Vijver; C.A.B. Boucher and M.T. Bubak: VIROLAB: a Distributed Decision Support System for Viral Disease Treatment, in M.T. Bubak; M. Turala and K. Wiatr, editors, CGW'07 proceedings, (extended abstract) Cracow' 07 Grid Workshop (CGW'07), pp. 33-34. Krakow, Poland, October 2008. ISBN 978-83-915141-9-1.
414 P.M.A. Sloot: VIROLAB: from the molecule to the man, eStrategies Projects, nr 4 pp. 53-55. British Publishers Ltd, 2008.
415 P.M.A. Sloot; P.V. Coveney; M.T. Bubak; A.-M. Vandamme; B. Ó Nualláin; D.A.M.C. van de Vijver and C.A.B. Boucher: Multi-Science Decision Support for HIV Drug Resistance Treatment, in T. Solomonides; J.C. Silverstein; J. Saltz; Y. Legré; M. Kratz; I. Foster; V. Breton and J.R. Beck, editors, Global Healthgrid: e-Science Meets Biomedical Informatics - Proceedings of HealthGrid 2008, in series Studies in Health Technology and Informatics, vol. 138, pp. 188-198. IOS Press, 2008. ISBN: 978-1-58603-874-8.
416 P.M.A. Sloot; P.V. Coveney; M.T. Bubak; A.-M. Vandamme; B. Ó Nualláin; D.A.M.C. van de Vijver and C.A.B. Boucher: Virolab: A Collaborative Decision Support System in Viral Disease Treatment, Reviews in Antiviral Therapy, vol. 3, pp. 4-7. Virology Education, 2008. ISSN 1872-437X.
417 A. Tirado Ramos; P.M.A. Sloot and M.T. Bubak: Grid-based Interactive Decision Support in BioMedicine, in T. El-Ghazali and A.Y. Zomaya, editors, Grids for Bioinformatics and Computational Biology, in series Wiley series on bioinformatics : computational techniques and engineering, pp. 225-246. John Wiley and Sons, USA, January 2008. ISBN: 978-0-471-78409-8.
418 G. Allen; J. Nabrzyski; E. Seidel; G.D. van Albada; J. Dongarra and P.M.A. Sloot: Computational Science - ICCS 2009: 9th International Conference, Baton Rouge, LA, USA, Proceedings, Part I, in series Lecture Notes in Computer Science, vol. 5544, Springer, Berlin, Heidelberg, May 2009. ISBN-13: 978-3-642-01969-2. (DOI: 10.1007/978-3-642-01970-8)
419 G. Allen; J. Nabrzyski; E. Seidel; G.D. van Albada; J. Dongarra and P.M.A. Sloot: Computational Science - ICCS 2009: 9th International Conference, Baton Rouge, LA, USA, Proceedings, Part II, in series Lecture Notes in Computer Science, vol. 5545, Springer, Berlin, Heidelberg, May 2009. ISBN-13: 978-3-642-01972-2. (DOI: 10.1007/978-3-642-01973-9)
420 M. Assel; D.A.M.C. van de Vijver; P. Liblin; K. Theys; D. Harezlak; B. Ó Nualláin; P. Nowakowski; M.T. Bubak; A.-M. Vandamme; S. Imbrechts; R. Sangeda; T. Jiang; D. Frentz and P.M.A. Sloot: A Collaborative Environment Allowing Clinical Investigations on Integrated Biomedical Databases, in T. Solomonides; M. Hofmann-Apitius; M. Freudigmann; S. C. Semler; Y. Legré and M. Kratz, editors, Healthgrid research, innovation, and business case: Proceedings of HealthGrid 2009, in series Studies in Health Technology and Informatics, vol. 147, pp. 51-61. IOS Press, January 2009. ISBN 978-1-60750-027-8. (DOI: 10.3233/978-1-60750-027-8-51)
421 L. Axner; A.G. Hoekstra; A. Jeays; P.V. Lawford; D.R. Hose and P.M.A. Sloot: Simulations of time harmonic blood flow in the Mesenteric artery: comparing finite element and lattice Boltzmann methods, BioMedical Engineering OnLine, (on-line only; PubMedID = 19799782) vol. 8, nr 1 pp. 23+8. October 2009. ISSN 1475-925X. (DOI: 10.1186/1475-925X-8-23)
422 A. Bossenbroek; A. Tirado Ramos and P.M.A. Sloot: Grid Resource Allocation by Means of Option Contracts, IEEE Systems Journal, vol. 3, nr 1 pp. 49-64. March 2009.
423 L. Caroprese; B. Ó Nualláin; P.M.A. Sloot and E. Zumpano: A Logical Framework for Detecting Anomalies in Drug Resistance Algorithms, in B.C. Desai, editor, Thirteenth International Database Engineering & Applications Symposium (IDEAS), Thirteenth International Database Engineering & Applications Symposium (IDEAS'09), Cetraro, Calabria, Italy, in series ACM International Conference Proceeding Series, pp. 23-30. ACM, Cetraro - Calabria - Italy, September 2009. ISBN:978-1-60558-402-7.
424 J. Cui; J.A. Kaandorp; P.M.A. Sloot; C.M. Lloyd and M.V. Filatov: Calcium Homeostasis and Signaling in Yeast Cells and Cardiac Myocytes, FEMS Yeast Research, vol. 9, nr 8 pp. 1137-1147. Wiley InterScience, Aug 2009. (DOI: 10.1111/j.1567-1364.2009.00552.x)
425 T. Gubała; M.T. Bubak and P.M.A. Sloot: Chapter XXVI: Semantic Integration for Research Environments, in M. Cannataro, editor, Handbook of Research on Computational Grid Technologies for Life Sciences, Biomedicine and Healthcare, IGI Publishing, Medical Information Science Reference, May 2009. ISBN: 978-1-60566-374-6.
426 J. Kroc and P.M.A. Sloot: Complex Systems Modeling by Cellular Automata, in J.R. Rabuñal Dopico; J. Dorado de la Calle and A. Pazos Sierra, editors, Encyclopedia of Artificial Intelligence, pp. 353-360. Information Science Reference, May 2009. ISBN: 978-1-59904-849-9.
427 S. Murtaza; A.G. Hoekstra and P.M.A. Sloot: Compute Bound and I/O Bound Cellular Automata Simulations on FPGA Logic, ACM Trans. Reconfigurable Technol. Syst., vol. 1, nr 4 pp. 23:1-23:21. ACM, New York, NY, USA, January 2009. ISSN 1936-7406. (DOI: 10.1145/1462586.1462592)
428 R. Quax; D.A. Bader and P.M.A. Sloot: Simulating Individual-Based Models of Epidemics in Hierarchical Networks, in G. Allen; J. Nabrzyski; E. Seidel; G.D. van Albada; J.J. Dongarra and P.M.A. Sloot, editors, Computational Science - ICCS 2009: 9th International Conference, Baton Rouge, LA, USA, Proceedings, Part I, International Conference on Computational Science 2009 (ICCS 2009), Baton Rouge, LA, USA, in series Lecture Notes in Computer Science, vol. 5544, pp. 725-734. Springer, Berlin, Heidelberg, May 2009. ISBN-13: 978-3-642-01969-2.
429 P.M.A. Sloot; P.V. Coveney; G. Ertaylan; V. Müller; C.A.B. Boucher and M.T. Bubak: HIV Decision Support: From Molecule to Man, Phil . Trans. R. Soc. A, vol. 367, nr 1898 pp. 2691-2703. 2009. (DOI: 10.1098/rsta.2009.0043)
430 P.M.A. Sloot: Crisis Computing: beslissingsondersteuning in een complexe wereld, Magazine Nationale Veiligheid en Crisisbeheersing, (in Dutch) vol. 7, nr 8 pp. 62-63. Ministerie van Binnenlandse Zaken en Koninkrijksrelaties, Nov.-Dec. 2009.
431 R.J. Strijkers; L.Y.L. Muller; M.L. Cristea; R.G. Belleman; C.T.A.M. de Laat; P.M.A. Sloot and R.J. Meijer: Interactive Control over a Programmable Computer Network Using a Multi-touch Surface, in G. Allen; J. Nabrzyski; E. Seidel; G.D. van Albada; J.J. Dongarra and P.M.A. Sloot, editors, Computational Science - ICCS 2009: 9th International Conference, Baton Rouge, LA, USA, Proceedings, Part II, in series Lecture Notes in Computer Science, vol. 5545, pp. 719-728. Springer, Berlin, Heidelberg, May 2009. ISBN-13: 978-3-642-01972-2.
432 E.V. Zudilova-Seinstra; P.M.A. Sloot; P.J.H. de Koning; A. Suinesiaputra; R.J. van der Geest and J.H.C. Reiber: Exploring 2D/3D Input Techniques for Medical Image Analysis, in International Conference on Information Visualisation, track Biomedical Visualization (MediViz09), pp. 147-152. IEEE Computer Society, Barcelona, Spain, July 2009. (DOI: 10.1109/VIZ.2009.18)
433 I. Altintas; M.K. Anand; D. Crawl; S. Bowers; A.S.Z. Belloum; P. Missier; B. Ludäscher; C.A. Goble and P.M.A. Sloot: Understanding Collaborative Studies through Interoperable Workflow Provenance, Lecture Notes in Computer Science, vol. 6378, pp. 42-58. (D.L. McGuinness, J.R. Michaelis and L. Moreau, editors), Springer, 2010. (DOI: 10.1007/978-3-642-17819-1_6)
434 P. Bellavista; R.-S. Chang; H.-C. Chao; S.-F. Lin and P.M.A. Sloot: Advances in Grid and Pervasive Computing, (5th International Conference, CPC 2010, Hualien, Taiwan, May 10-13, 2010, Proceedings) in series Lecture Notes in Computer Science, vol. 6104, Springer, Berlin, Heidelberg, May 2010. ISBN-13: 978-3-642-13066-3. (DOI: 10.1007/978-3-642-13067-0)
435 P. Bellavista; R.-S. Chang; H.-C. Chao; S.-F. Lin and P.M.A. Sloot: Advances in Grid and Pervasive Computing: 5th International Conference, GPC 2010, Hualien, Taiwan, May 10-13, 2010: Proceedings, Advances in Grid and Pervasive Computing, (Bellavista2010a 5th International Conference, CPC 2010, Hualien, Taiwan, May 10-13, 2010, Proceedings) Springer, 2010.
436 Q.C. Bui; B. Ó Nualláin; C.A.B. Boucher and P.M.A. Sloot: Extracting causal relations on HIV drug resistance from literature, BMC Bioinformatics, (PubMedID 20178611) vol. 11, nr 1 pp. 101+11. 2010. ISSN 1471-2105. (DOI: 10.1186/1471-2105-11-101)
437 J. Cui; J.A. Kaandorp; P.M.A. Sloot and P.S. Thiagarajan: Simulating Calcineurin-Centered Calcium Signaling Network in Cardiac Myocytes, in J.E. García and V.R. Wright, editors, Congestive Heart Failure: Symptoms, Causes and Treatment, in series Cardiology Research and Clinical Developments, pp. 111-127. Nova Publishers, 2010. ISBN 978-1-60876-677-2.
438 D. van Dijk; P.M.A. Sloot; J.C. Tay and M.C. Schut: Individual-based simulation of sexual selection: A quantitative genetic approach, in P.M.A. Sloot; G.D. van Albada and J. Dongarra, editors, ICCS 2010, (Proceedings of the $10^th$ International Conference on Computational Science, May 31 - June 2, Amsterdam) in series Procedia Computer Science, vol. 1, nr 1 pp. 2003 - 2011. Elsevier B.V., Amsterdam, May 2010. ISSN: 1877-0509. (DOI: 10.1016/j.procs.2010.04.224)
439 D. van Dijk; G. Ertaylan; C.A.B. Boucher and P.M.A. Sloot: Identifying potential survival strategies of HIV-1 through virus-host protein interaction networks, BMC Systems Biology, (PubMedID 20633292) vol. 4, nr 1 pp. 96+17. 2010. ISSN 1752-0509. (DOI: 10.1186/1752-0509-4-96)
440 D. Frentz; C.A.B. Boucher; M. Assel; A. De Luca; M. Fabbiani; F. Incardona; P. Libin; N. Manca; V. Müller; B. Ó Nualláin; R. Paredes; M.C.F. Prosperi; E. Quiros-Roldan; L. Ruiz; P.M.A. Sloot; C. Torti; A.-M. Vandamme; K. van Laethem; M. Zazzi and D.A.M.C. van de Vijver: Comparison of HIV-1 Genotypic Resistance Test Interpretation Systems in Predicting Virological Outcomes Over Time, PLoS ONE, vol. 5, nr 7 pp. e11505+9. Public Library of Science, July 2010. (DOI: 10.1371/journal.pone.0011505)
441 A.G. Hoekstra; J. Kroc and P.M.A. Sloot, editors: Simulating Complex Systems by Cellular Automata, in series Understanding Complex Systems, 384 pages. Springer, 2010. ISBN: 978-3-642-12202-6.
442 A.G. Hoekstra; J. Kroc and P.M.A. Sloot: Introduction to Modeling of Complex Systems Using Cellular Automata, in Hoekstra,A.G.; Kroc,J. and Sloot,P.M.A., editors, Simulating Complex Systems by Cellular Automata, pp. 1-16. Springer, 2010.
443 S. Jaeger; G. Ertaylan; D. van Dijk; U. Leser and P.M.A. Sloot: Inference of Surface Membrane Factors of HIV-1 Infection through Functional Interaction Networks, PLoS One, vol. 5, nr 10 pp. e13139+12. 2010. (DOI: 10.1371/journal.pone.0013139)
444 V.V. Krzhizhanovskaya; V.V. Korkhov; J.T. Moscicki and P.M.A. Sloot: Dynamic workload balancing with user-level scheduling for parallel applications on heterogeneous Grid resources, in Proceedings of HPC 2010 "High Performance Computing, GRIDS and clouds", An International Advanced Workshop, HPC 2010, "High Performance Computing, GRIDS and clouds", An International Advanced Workshop, Cetraro, Italy, 2010.
445 S. Mei; D.A.M.C. van de Vijver; L. Xuan; Y. Zhu and P.M.A. Sloot: Quantitatively evaluating interventions in the influenza A (H1N1) epidemic on China campus grounded on individual-based simulations, in P.M.A. Sloot; G.D. van Albada and J. Dongarra, editors, ICCS 2010, (Proceedings of the $10^th$ International Conference on Computational Science, May 31 - June 2, Amsterdam) in series Procedia Computer Science, vol. 1, nr 1 pp. 1675-1682. Elsevier B.V., Amsterdam, May 2010. ISSN: 1877-0509. (DOI: 10.1016/j.procs.2010.04.187)
446 S. Mei; P.M.A. Sloot; R. Quax; Y. Zhu and W. Wang: Complex Agent Networks explaining the HIV epidemic among homosexual men in Amsterdam, Mathematics and Computers in Simulation, vol. 80, nr 5 pp. 1018-1030. Jan 2010. (DOI: 10.1016/j.matcom.2009.12.008)
447 L.A. Naumov; A.G. Hoekstra and P.M.A. Sloot: The influence of mitoses rate on growth dynamics of a cellular automata model of tumour growth, in P.M.A. Sloot; G.D. van Albada and J. Dongarra, editors, ICCS 2010, in series Procedia Computer Science, vol. 1, nr 1 pp. 971 - 978. Elsevier B.V., Amsterdam, May 2010. ISSN: 1877-0509. (DOI: 10.1016/j.procs.2010.04.107)
448 M.C.F. Prosperi; M. Rosen-Zvi; A. Altmann; M. Zazzi; S. Di Giambenedetto; R. Kaiser; E. Schülter; D. Struck; P.M.A. Sloot; D.A.M.C. van de Vijver; A.-M. Vandamme; A. Sönnerborg; for the EuResist and Virolab study groups: Antiretroviral Therapy Optimisation without Genotype Resistance Testing: A Perspective on Treatment History Based Models, PLoS ONE, (Erratum in PLoS One. 2011;6(4). doi:10.1371/annotation/d0254103-21b9-4078-836b-57ba5bd1c26a) vol. 5, nr 10 pp. e13753+8. Public Library of Science, October 2010. (DOI: 10.1371/journal.pone.0013753)
449 G. Qiu; B.D. Kandhai and P.M.A. Sloot: Modeling options markets by focusing on active traders, (Proceedings of the $10^th$ International Conference on Computational Science, May 31 - June 2, Amsterdam) vol. 1, nr 1 pp. 2457 - 2462. (P.M.A. Sloot; G.D. van Albada and J. Dongarra, editors), Elsevier B.V., Amsterdam, May 2010. ISSN: 1877-0509. (DOI: 10.1016/j.procs.2010.04.277)
450 U. Schwiegelshohn; R.M. Badia; M.T. Bubak; M. Danelutto; S. Dustdar; F. Gagliardi; A. Geiger; L. Hluchy; D. Kranzlmüller; E. Laure; T. Priol; A. Reinefeld; M. Resch; A. Reuter; O. Rienhoff; T. Rüter; P.M.A. Sloot; D. Talia; K. Ullmann; R. Yahyapour and G. von Voigt: Perspectives on grid computing, Future Generation Computer Systems, vol. 26, nr 8 pp. 1104-1115. 2010. ISSN 0167-739X. (DOI: 10.1016/j.future.2010.05.010)
451 P.M.A. Sloot; G.D. van Albada and J. Dongarra, editors: ICCS 2010, (Proceedings of the $10^th$ International Conference on Computational Science, May 31 - June 2, Amsterdam) in series Procedia Computer Science, vol. 1, nr 1 2772 pages. Elsevier B.V., Amsterdam, May 2010. ISSN: 1877-0509.
452 P.M.A. Sloot and A.G. Hoekstra: Multi-scale modelling in computational biomedicine, Brief in Bioinform, vol. 11, nr 1 pp. 142-152. Oxford University Press, 2010. (DOI: 10.1093/bib/bbp038)
453 P.M.A. Sloot; G.D. van Albada and J. Dongarra: Preface, 2010. ISSN: 1877-0509. (DOI: 10.1016/j.procs.2010.04.002)
454 P.M.A. Sloot: Computational science: A kaleidoscopic view into science, Journal of Computational Science, (editorial) vol. 1, nr 4 pp. 189-189. Elsevier B.V., December 2010. ISSN 1877-7503. (DOI: 10.1016/j.jocs.2010.11.001)
455 A. Sottoriva; P.M.A. Sloot; J.P. Medema and L. Vermeulen: Exploring Cancer Stem Cell Niche Directed Tumor Growth, Cell Cycle, vol. 9, nr 8 pp. 1472-1479. Landes Bioscience, 2010. (DOI: 10.4161/cc.9.8.11198)
456 A. Sottoriva; J.J.C. Verhoeff; T. Borovski; S.K. McWeeney; L.A. Naumov; J.P. Medema; P.M.A. Sloot and L. Vermeulen: Cancer Stem Cell Tumor Model Reveals Invasive Morphology and Increased Phenotypical Heterogeneity, Cancer Research, vol. 70, nr 1 pp. 46-56. American Association for Cancer Research, 2010. Print ISSN: 0008-5472; Online ISSN: 1538-7445. (DOI: 10.1158/0008-5472.CAN-09-3663)
457 N. Zarrabi; E. Mancini; J.C. Tay; S. Shahand and P.M.A. Sloot: Modeling HIV-1 intracellular replication: two simulation approaches, in P.M.A. Sloot; G.D. van Albada and J. Dongarra, editors, ICCS 2010, in series Procedia Computer Science, vol. 1, nr 1 pp. 555-564. Elsevier B.V., Amsterdam, May 2010. ISSN: 1877-0509. (DOI: 10.1016/j.procs.2010.04.059)
458 E.V. Zudilova-Seinstra; P.J.H. de Koning; A. Suinesiaputra; B.W. van Schooten; R.J. van der Geest; J.H.C. Reiber and P.M.A. Sloot: Evaluation of 2D and 3D Glove Input Applied to Medical Image Analysis, International Journal of Human-Computer Studies, vol. 68, nr 6 pp. 355-369. 2010. (DOI: 10.1016/j.ijhcs.2009.08.001)
459 E.V. Zudilova-Seinstra; B.W. van Schooten; A. Suinesiaputra; R.J. van der Geest; E.M.A.G. van Dijk; J.H.C. Reiber and P.M.A. Sloot: Exploring Individual User Differences in the 2D/3D Interaction with Medical Image Data, Virtual Reality, vol. 14, nr 2 pp. 105-118. Springer, 2010. ISSN 1359-4338 (Print) 1434-9957 (Online). (DOI: 10.1007/s10055-009-0131-4)
460 I. Altintas; M.K. Anand; T. Vuong; S. Bowers; B. Ludäscher and P.M.A. Sloot: A Data Model for Analyzing User Collaborations in Workflow-Driven eScience, The International Journal of Computers and Their Applications (IJCA), vol. 18, nr 3 pp. 160-179. Dec. 2011. ISSN 1076-5204.
461 A. Bankhead, III; E. Mancini; A.C. Sims; R.S. Baric; S.K. McWeeney and P.M.A. Sloot: A Simulation Framework to Investigate in vitro Viral Infection Dynamics, in M. Sato; S. Matsuoka; G.D. van Albada; J. Dongarra and P.M.A. Sloot, editors, Proceedings of the International Conference on Computational Science, ICCS 2011, in series Procedia Computer Science, vol. 4, nr 1 pp. 1798-1807. Elsevier, 2011. ISSN 1877-0509. (DOI: 10.1016/j.procs.2011.04.195)
462 D. Botman; J.A. Kaandorp and P.M.A. Sloot: An integrated approach to infer the gene network in early development of the cnidarian Nematostella venctensis, in T.C.G. Bosch and T.W. Holstein, editors, Searching for Eve: Basal metazoans and the evolution of multicellular complexity, (abstract) International Workshop: Searching for Eve, pp. 101-101. Tutzing, Germany, 2011.
463 Q.C. Bui; S. Katrenko and P.M.A. Sloot: A hybrid approach to extract protein-protein interactions, Bioinformatics, vol. 27, nr 2 pp. 259-265+7. 2011. (DOI: 10.1093/bioinformatics/btq620)
464 Q.C. Bui and P.M.A. Sloot: Extracting Biological Events from Text Using Simple Syntactic Patterns, in Proceedings of BioNLP Shared Task 2011 Workshop, BioNLP Shared Task 2011 Workshop, pp. 143-146. Association for Computational Linguistics, Portland Oregon, 2011.
465 S. Mei; R. Quax; D.A.M.C. van de Vijver; Y. Zhu and P.M.A. Sloot: Increasing risk behaviour can outweigh the benefits of antiretroviral drug treatment on the HIV incidence among men-having-sex-with-men in Amsterdam, BMC Infectious Diseases, vol. 11, nr 118 17 pages. 2011. (DOI: 10.1186/1471-2334-11-118)
466 J.T. Mościcki; M. Lamanna; M.T. Bubak and P.M.A. Sloot: Processing moldable tasks on the grid: Late job binding with lightweight user-level overlay, Future Generation Computer Systems, vol. 27, nr 6 pp. 725-736. June 2011. ISSN 0167-739X. (DOI: 10.1016/j.future.2011.02.002)
467 S. Murtaza; A.G. Hoekstra and P.M.A. Sloot: Cellular Automata Simulations on a FPGA cluster, International Journal of High Performance Computing Applications, vol. 25, nr 2 pp. 193-204. 2011. (DOI: 10.1177/1094342010383138)
468 L.A. Naumov; A.G. Hoekstra and P.M.A. Sloot: Cellular automata models of tumour natural shrinkage, Physica A, vol. 390, nr 12 pp. 2283-2290. June 2011. ISSN 0378-4371. (DOI: 10.1016/j.physa.2011.02.006)
469 M.C.F. Prosperi; M. Rosen-Zvi; A. Altmann; M. Zazzi; S. Di Giambenedetto; R. Kaiser; E. Schülter; D. Struck; P.M.A. Sloot; D.A.M.C. van de Vijver; A.-M. Vandamme; A. Sönnerborg; for the EuResist and Virolab study groups: Correction: Antiretroviral Therapy Optimisation without Genotype Resistance Testing: A Perspective on Treatment History Based Models, PLoS ONE, (Erratum for PLoS One. 2010;5(10). doi:10.1371/journal.pone.0013753) October 2011. (DOI: 10.1371/annotation/d0254103-21b9-4078-836b-57ba5bd1c26a)
470 R. Quax; D.A. Bader and P.M.A. Sloot: SEECN: SIMULATING COMPLEX SYSTEMS USING DYNAMIC COMPLEX NETWORKS, International Journal for Multiscale Computational Engineering, Special Section, vol. 9, nr 2 pp. 201-214. 2011. (DOI: 10.1615/IntJMultCompEng.v9.i2.50)
471 M. Sato; S. Matsuoka; G.D. van Albada; J. Dongarra and P.M.A. Sloot, editors: Proceedings of the International Conference on Computational Science, ICCS 2011, in series Procedia Computer Science, vol. 4, nr 1 2354 pages. Elsevier, 2011. ISSN 1877-0509.
472 M. Sato; S. Matsuoka; G.D. van Albada; J. Dongarra and P.M.A. Sloot: Preface, 2011. ISSN 1877-0509. (DOI: 10.1016/j.procs.2011.04.001)
473 N. Zarrabi; M.C.F. Prosperi; A. de Luca and P.M.A. Sloot: Inferring HIV transmission networks from epidemic and genetic information, in European Conference on Complex Systems, ECCS'11, 2011.
474 A. Adamatzky; M.H. Lees and P.M.A. Sloot: Bio-development of motorway networks in the Netherlands: A slime mould approach, Advances in Complex Systems, vol. 15, nr 4 pp. 1250034+28. 2012. ISSN: 0219-5259, 1793-6802. (DOI: 10.1142/S0219525912500348)
475 A. Adamatzky; S. Akl; R. Alonso-Sanz; W. van Dessel; Z. Ibrahim; A. Ilachinski; J. Jones; A.V.D.M. Kayem; G.J. Martínez; P. De Oliveira; M. Prokopenko; T. Schubert; P.M.A. Sloot; E. Strano and X.-S. Yang: Are motorways rational from slime mould's point of view, International Journal of Parallel, Emergent and Distributed Systems, (Available on-line June 21 2012) 2012. (DOI: 10.1080/17445760.2012.685884)
476 A. Adamatzky; M.H. Lees and P.M.A. Sloot: Physarum in the Netherlands: Responding to the Flood, in A. Adamatzky, editor, Bioevaluation of World Transport Networks, in series Non Linear Science, pp. 1-380. World Scientific, 2012. ISBN: 978-981-4407-03-8.
477 A. Adamatzky; S. Akl; R. Alonso-Sanz; W. van Dessel; Z. Ibrahim; A. Ilachinski; J. Jones; A.V.D.M. Kayem; G.J. Martínez; P. De Oliveira; M. Prokopenko; T. Schubert; P.M.A. Sloot; E. Strano and X.-S. Yang: Biorationality of motorways, in A. Adamatzky, editor, Bioevaluation of World Transport Networks, World Scientific, 2012. ISBN: 978-981-4407-03-8.
478 H. Ali; Y. Shi; D. Khazanchi; M.H. Lees; G.D. van Albada; J. Dongarra and P.M.A. Sloot: Proceedings of the International Conference on Computational Science, ICCS 2012, 2024 pages. 2012. ISSN 1877-0509.
479 H. Ali; Y. Shi; D. Khazanchi; M.H. Lees; G.D. van Albada; J. Dongarra and P.M.A. Sloot: Empowering Science through Computing, Preface for ICCS 2012, Procedia Computer Science, 2012. ISSN 1877-0509. (DOI: 10.1016/j.procs.2012.04.001)
480 A. Bankhead, III; E. Mancini; A.C. Sims; R.S. Baric; S.K. McWeeney and P.M.A. Sloot: A simulation framework to investigate in vitro viral infection dynamics, Journal of Computational Science, (In press) 2012. (DOI: 10.1016/j.jocs.2011.08.007)
481 Q.C. Bui and P.M.A. Sloot: A robust approach to extract biomedical events from literature, Bioinformatics, vol. 28, nr 20 pp. 2654-2661. Oxford University Press, October 2012. Online ISSN 1460-2059 - Print ISSN 1367-4803. (DOI: 10.1093/bioinformatics/bts487)
482 C.D. Erdbrink; V.V. Krzhizhanovskaya and P.M.A. Sloot: Controlling flow-induced vibrations of flood barrier gates with data-driven an d finite-element modelling, in Klijn, and Schweckendiek,, editors, Comprehensive Flood Risk Management, Book of abstracts of the 2nd European Conference on FLOODrisk Management, 2nd European Conference on FLOODrisk Management, pp. 102-103. Taylor & Francis Group, London, 2012.
483 C.D. Erdbrink; V.V. Krzhizhanovskaya and P.M.A. Sloot: Controlling flow-induced vibrations of flood barrier gates with data-driven and finite-element modelling, in Klijn, and Schweckendiek,, editors, Comprehensive Flood Risk Management, 2nd European Conference on FLOODrisk Management, pp. 425-434. Taylor & Francis Group, London, 2012.
484 C.D. Erdbrink; V.V. Krzhizhanovskaya and P.M.A. Sloot: Free-surface flow simulations for discharge-based operation of hydraulic structure gates, Journal of Hydroinformatics, 2012.
485 E. Mancini; F. Castiglione; M. Bernaschi; A. de Luca and P.M.A. Sloot: HIV Reservoirs and Immune Surveillance Evasion Cause the Failure of Structured Treatment Interruptions: A Computational Study, PLoS ONE, vol. 7, nr 4 pp. e36108. Public Library of Science, April 2012. (DOI: 10.1371/journal.pone.0036108)
486 A. Mordvintsev; V.V. Krzhizhanovskaya; M.H. Lees and P.M.A. Sloot: Simulation of City Evacuation Coupled to Flood Dynamics, in Proceedings of the 6th International Conference on Pedestrian and Evacuation Dynamics. Book of abstracts., 6th International Conference on Pedestrian and Evacuation Dynamics, pp. 156-158. ETH Zurich, Zurich, 2012.
487 G. Qiu; B.D. Kandhai; N.F. Johnson and P.M.A. Sloot: Understanding Complex Dynamics in Derivatives Finance: Why do Options Markets Smile?, Advances in Complex Systems, vol. 15, nr 5 pp. 1250050+19. 2012. (DOI: 10.1142/S0219525912500506)
488 R. Quax; A. Apolloni and P.M.A. Sloot: Information processing reveals how microscopic components affect the macroscopic system-state in complex networks, Scientific Reports, 2012.
489 P.M.A. Sloot and R. Quax: Information processing as a paradigm to model and simulate complex systems, Journal of Computational Science, (editorial) pp. 247-249. September 2012. ISSN: 1877-7503. (DOI: 10.1016/j.jocs.2012.07.001)
490 N. Zarrabi; M.C.F. Prosperi; R.G. Belleman; M. Colafigli; A. De Luca and P.M.A. Sloot: Combining Epidemiological and Genetic Networks Signifies the Importance of Early Treatment in HIV-1 Transmission, PLoS One, vol. 7, nr 9 pp. e46156+15. Public Library of Science, September 2012. (DOI: 10.1371/journal.pone.0046156)
491 V. Alexandrov; M. Lees; V. Krzhizhanovskaya; J. Dongarra and P.M.A. Sloot: Proceedings of the International Conference on Computational Science, ICCS 2013, 2650 pages. 2013. ISSN 1877-0509.
492 V. Alexandrov; M. Lees; V. Krzhizhanovskaya; J. Dongarra and P.M.A. Sloot: Computation at the Frontiers of Science, Preface for ICCS 2013, Procedia Computer Science, 2013. ISSN 1877-0509. (DOI: 10.1016/j.procs.2013.05.163)
493 I. Bartha; M. Assel; P.M.A. Sloot; M. Zazzi; C. Torti; E. Schülter; A. De Luca; A. Sönnerborg; A.B. Abecasis; K. van Laethem; A. Rosi; J. Svärd; R. Paredes; D.A. van de Vijver; A.-M. Vandamme and V. Müller: Superinfection with drug-resistant HIV is rare and does not contribute substantially to therapy failure in a large European cohort, BMC Infectious Diseases, vol. 13, 2013.
494 L.B. Carey; D. van Dijk; P. M.A. Sloot; J. A Kaandorp and E. Segal: Promoter sequence determines the relationship between expression level and noise, Plos Biol., vol. 11, nr 4 pp. e1001528+15. 2013. (DOI: 10.1371/journal.pbio.1001528)
495 A. Czaplicka.; J.A. Hołyst and P.M.A. Sloot: Noise enhances information transfer in hierarchical networks, Nature Scientific Reports, vol. 3, 2013. (DOI: 10.1038/srep01223)
496 A. Czaplicka; J.A. Hołyst and P.M.A. Sloot: Stochastic resonance for information flows on hierarchical networks, The European Physical Journal - Special Topics, vol. 222, nr 6 pp. 1335-1345. 2013. (DOI: 10.1140/epjst/e2013-01929-5)
497 L.J. Dijkstra; A.V. Yakushev; P.A.C. Duijn; A.V. Boukhanovsky and P.M.A. Sloot: Inference of the Russian drug community from one of the largest social networks in the Russian Federation, Quality & Quantity, International Journal of Methodology, pp. 1-17. Springer Netherlands, 2013. ISSN 0033-5177. (DOI: 10.1007/s11135-013-9921-6)
498 C.D. Erdbrink; V.V. Krzhizhanovskaya and P.M.A. Sloot: Free-surface flow simulations for discharge-based operation of hydraulic structure gates, Journal of Hydroinformatics, 2013.
499 V.V. Krzhizhanovskaya; N.B. Melnikova; A.M. Chirkin; S.V. Ivanov; A.V. Boukhanovsky and P.M.A. Sloot: Distributed Simulation of City Inundation by Coupled Surface and Subsurface Porous Flow for Urban Flood Decision Support System, in V. Alexandrov; M.H. Lees; V. Krzhizhanovskaya; J. Dongarra and P.M.A. Sloot, editors, Proceedings of the International Conference on Computational Science, ICCS 2013, pp. 1046-1056. 2013. ISSN 1877-0509. (DOI: 10.1016/j.procs.2013.05.270)
500 P. Libin; G. Beheydt; K. Deforche; S. Imbrechts; F. Ferreira; K. van Laethem; K. Theys; A.P. Carvalho; J. Cavaco-Silva; G. Lapadula; C. Torti; M. Assel; S. Wesner; J. Snoeck; J. Ruelle; A. De Bel; P. Lacor; P. De Munter; E. van Wijngaerden; M. Zazzi; R. Kaiser; A. Ayouba; M. Peeters; T. de Oliveira; L.C. Alcantara, Jr.; Z. Grossman; P.M.A. Sloot; D. Otelea; S. Paraschiv; C.A.B. Boucher; R. Camacho and A.-M. Vandamme: RegaDB: Community-driven data management and analysis for infectious diseases, Bioinformatics, 5 pages. April 2013. (DOI: 10.1093/bioinformatics/btst162)
501 S. Mei; Y. Zhu; X. Qiu; Z. Zu; T. Zheng; A.V. Boukhanovsky and P.M.A. Sloot: Individual decision making can drive epidemics: a fuzzy cognitive map study, IEEE Transactions on Fuzzy Systems, (On-line first) vol. 21, nr 6 pp. 1-10. 2013. ISSN 1063-6706. (DOI: 10.1109/TFUZZ.2013.2251638)
502 N.B. Melnikova; V.V. Krzhizhanovskaya and P.M.A. Sloot: Modeling earthen dikes using real-time sensor data, Journal of Hydrology, vol. 496, pp. 154-165. 2013. (DOI: 10.1016/j.jhydrol.2013.05.031)
503 N.B. Melnikova; V.V. Krzhizhanovskaya and P.M.A. Sloot: Modeling Earthen Dike Stability: Sensitivity Analysis and Automatic Calibration of Diffusivities Based on Live Sensor Data, Journal of Hydrology, 2013.
504 A.A. Mordvintsev; V.V. Krzhizhanovskaya; M.H. Lees and P.M.A. Sloot: Simulation of City Evacuation Coupled to Flood Dynamics, in Pedestrian and Evacuation Dynamics, (in press) 6th International Conference on Pedestrian and Evacuation Dynamics, Spinger, 2013.
505 B.E. Nichols; C.A.B. Boucher; J.H. van Dijk; P.E. Thuma; J.L. Nouwen; R. Baltussen; J. van de Wijgert; P.M.A. Sloot and D.A.M.C. van de Vijver: Cost-Effectiveness of Pre-Exposure Prophylaxis (PrEP) in Preventing HIV-1 Infections in Rural Zambia: A Modeling Study, PLoS ONE, vol. 8, nr 3 pp. e59549. Public Library of Science, March 2013. (DOI: 10.1371/journal.pone.0059549)
506 A.L. Pyayt; A.P. Kozionov; V.T. Kusherbaeva; I.I. Mokhov; V.V. Krzhizhanovskaya; B.J. Broekhuijsen; R.J. Meijer and P.M.A. Sloot: Signal analysis and anomaly detection for flood early warning systems, Journal of Hydroinformatics, 2013.
507 A.L. Pyayt; A.P. Kozionov; I.I. Mokhov; B. Lang; V.V. Krzhizhanovskaya and P.M.A. Sloot: An Approach for Real-time Levee Health Monitoring Using Signal Processing Methods, in V. Alexandrov; M.H. Lees; V. Krzhizhanovskaya; J. Dongarra and P.M.A. Sloot, editors, Proceedings of the International Conference on Computational Science, ICCS 2013, pp. 2357-2366. 2013. ISSN 1877-0509. (DOI: 10.1016/j.procs.2013.05.407)
508 R. Quax; B.D. Kandhai and P.M.A. Sloot: Information dissipation as an early-warning signal for the Lehman Brothers collapse in financial time series, Scientific Reports, vol. 3, 2013. (DOI: 10.1038/srep01898)
509 R. Quax; Apolloni,A. and P.M.A. Sloot: The diminishing role of hubs in dynamical processes on complex networks, Journal of the Royal Society Interface, vol. 10, nr 88 2013. ISSN: 1742-5662. (DOI: 10.1098/rsif.2013.0568)
510 R. Quax; D.A. van de Vijver; D. Frentz and P.M.A. Sloot: Inferring epidemiological parameters from phylogenetic information for the HIV-1 epidemic among MSM, The European Physical Journal - Special Topics, vol. 222, nr 6 pp. 1347-1358 metis_id = 398223. 2013. ISSN 1951-6355 and 1951-6401. (DOI: 10.1140/epjst/e2013-01930-0)
511 R. Quax; A. Apolloni and P.M.A. Sloot: Towards understanding the behavior of physical systems using information theory, The European Physical Journal - Special Topics, vol. 222, nr 6 pp. 1389-1401. 2013. ISSN 1951-6355 and 1951-6401.
512 P.M.A. Sloot; G. Kampis and L. Gulyás: Advances in dynamic temporal networks: Understanding the temporal dynamics of complex adaptive networks, The European Physical Journal - Special Topics, vol. 222, nr 6 pp. 1287-1293. 2013. ISSN 1951-6355 and 1951-6401.
513 N. Toth; L. Gulyás; R.O. Legendi; P. Duijn; P.M.A. Sloot and G. Kampis: The importance of centralities in dark network value chains, The European Physical Journal - Special Topics, vol. 222, nr 6 pp. 1413-1439. 2013. ISSN 1951-6355 and 1951-6401.
514 N. Zarrabi; M.C.F. Prosperi; R.G. Belleman; S. Di Giambenedetto; M. Fabbiani; A. De Luca and P.M.A. Sloot: Combining social and genetic networks to study HIV transmission in mixing risk groups, The European Physical Journal - Special Topics, vol. 222, nr 6 pp. 1377-1387. 2013.
515 Wei Duan; Rick Quax; Michael Lees; Xiaogang Qiu and Peter M A Sloot: Topology dependent epidemic spreading velocity in weighted networks, Journal of Statistical Mechanics: Theory and Experiment, vol. 2014, nr 12 pp. P12020. 2014.
516 D. Abramson; M.H. Lees; V.V. Krzhizhanovskaya; J.J. Dongarra and P.M.A. Sloot: Proceedings of the International Conference on Computational Science, ICCS 2014, 2520 pages. 2014. ISSN 1877-0509.
517 D. Abramson; M.H. Lees; V.V. Krzhizhanovskaya; J.J. Dongarra and P.M.A. Sloot: Big Data Meets Computational Science, Preface for ICCS 2014, Procedia Computer Science, (2014 International Conference on Computational Science) vol. 29, pp. 1 - 7. 2014. ISSN 1877-0509. (DOI: 10.1016/j.procs.2014.04.002)
518 Q.-C. Bui; P.M.A. Sloot; E.M. van Mulligen and J.A. Kors: A novel feature-based approach to extract drug-drug interactions from biomedical text, Bioinformatics, 2014. (DOI: 10.1093/bioinformatics/btu557)
519 S.A. Cheong; T.L. Tan; C.-C. Chen; W.-L. Chang; Z. Liu; L.Y. Chew; P.M.A. Sloot and N.F. Johnson: Short-Term Forecasting of Taiwanese Earthquakes Using a Universal Model of Fusion-Fission Processes, Sci. Rep., vol. 4, pp. 3624+7. Nature Publishing Group/Macmillan, 2014. ISSN 2045-2322. (DOI: 10.1038/srep03624)
520 P.A.C. Duijn; V. Kashirin and P.M.A. Sloot: The Relative Ineffectiveness of Criminal Network Disruption, Sci. Rep., vol. 4, pp. 4238+15. Nature Publishing Group/Macmillan, 2014. ISSN 2045-2322. (DOI: 10.1038/srep04238)
521 A.V. Dukhanov; V.V. Krzhizhanovskaya; A. Bilyatdinova; A.V. Boukhanovsky and P.M.A. Sloot: Double-degree Master's Program in Computational Science: Experiences of ITMO University and University of Amsterdam, Procedia Computer Science, (2014 International Conference on Computational Science) vol. 29, pp. 1433 - 1445. 2014. ISSN 1877-0509. (DOI: 10.1016/j.procs.2014.05.130)
522 C.D. Erdbrink; V.V. Krzhizhanovskaya and P.M.A. Sloot: Reducing cross-flow vibrations of underflow gates: experiments and numerical studies, Journal of Fluids and Structures, 2014.
523 C.D. Erdbrink; V.V. Krzhizhanovskaya and P.M.A. Sloot: Evolutionary Design of Numerical Methods: Generating Finite Difference and Integration Schemes by Differential Evolution, IEEE Transactions on Evolutionary Computation, 2014.
524 N.B. Melnikova; D. Jordan; V.V. Krzhizhanovskaya and P.M.A. Sloot: Slope Instability of the Earthen Levee in Boston, UK: Numerical Simulation and Sensor Data Analysis, Computers and Geotechnics, 2014.
525 N.B. Melnikova; D. Jordan; V.V. Krzhizhanovskaya and P.M.A. Sloot: Experimental Collapse of the IJkDijk: Numerical Prediction of Failure Mode and Posterior Sensor Data Analysis, Canadian Geotechnical Journal, 2014.
526 A.L. Pyayt; A.P. Kozionov; I.I. Mokhov; B. Lang; R.J. Meijer; V.V. Krzhizhanovskaya and P.M.A. Sloot: Time-frequency Methods for Structural Health Monitoring, Sensors, vol. 14, nr 3 pp. 5147-5173. March 2014. ISSN 1424-8220. (DOI: 10.3390/s140305147)
527 D. Roy; M.H. Lees; B. Palavalli; K. Pfeffer and P.M.A. Sloot: The emergence of slums: A contemporary view on simulation models, Environmental Modelling & Software, vol. 59, nr 0 pp. 76-90. 9 2014. (DOI: 10.1016/j.envsoft.2014.05.004)
528 A. Bilyatdinova; A.V. Dukhanov; K.O. Bochenina; V.V. Krzhizhanovskaya; A.V. Boukhanovsky and P.M.A. Sloot: Dutch-Russian Double Degree Master's Program Curricula in Computational Science and High Performance Computing, in Frontiers in Education Conference (FIE), IEEE, 2014.
529 A.S. Mordvintsev; V.V. Krzhizhanovskaya; M.H. Lees and P.M.A. Sloot: Simulation of City Evacuation Coupled to Flood Dynamics, in Pedestrian and Evacuation Dynamics 2012, Springer, 2014. 978-3-319-02446-2.
530 C.D. Erdbrink; V.V. Krzhizhanovskaya and P.M.A. Sloot: Free-surface flow simulations for discharge-based operation of hydraulic structure gates, Journal of Hydroinformatics, 2014.
531 V. Viswanthan; C.E. Lee; M.H. Lees; S.A. Cheong and P.M.A. Sloot: Quantitative Comparison Between Crowd Models for Evacuation Planning and Evaluation, The European Physical Journal B. Condensed Matter Physics, vol. 87, nr 2 pp. 1-11. 2014.
532 S. Koziel; L. Leifsson; M. Lees; V.V. Krzhizhanovskaya; J. Dongarra and P.M.A. Sloot: Computational Science at the Gates of Nature, preface for ICCS 2015, in International Conference On Computational Science, ICCS 2015: Computational Science at the Gates of Nature, Elsevier, 2015.
533 E. Merelli; M. Rucco; P.M.A. Sloot and L. Tesei: Topological Characterization of Complex Systems: Using Persistent Entropy, Entropy, 2015.
534 S. Mei; N. Zarrabi; M.H. Lees and P.M.A. Sloot: Complex agent networks: An emerging approach for modeling complex systems, Applied Soft Computing, 2015.
535 V.R. Melnikov; V.V. Krzhizhanovskaya; A.V. Boukhanovsky and P.M.A. Sloot: Data-driven modeling of transportation systems and traffic data analysis during a major power outage in the Netherlands, in 4th International Young Scientist Conference on Computational Science, Elsevier, 2015.
536 P.A.C. Duijn and P.M.A. Sloot: From Data to Disruption, Digital Investigation, 2015.
537 N. Melnikova; D. Jordan; V. Krzhizhanovskaya and P. Sloot: Numerical prediction of the IJkDijk trial embankment failure, Proceedings of the Institution of Civil Engineers. Geotechnical Engineering, 2015.
538 V.V. Krzhizhanovskaya; A.V. Dukhanov; A. Bilyatdinova; A.V. Boukhanovsky and P.M.A. Sloot: Russian-Dutch double-degree Master’s programme in computational science in the age of global education, Journal of Computational Science, 2015.
539 S. Mei; B. Chen; Y. Zhu; M.H. Lees; A.V. Boukhanovsky and P.M.A. Sloot: Simulating city-level airborne infectious diseases, Computers, Environment and Urban Systems, 2015.
540 V. Viswanathan; M. Lees and P.M.A. Sloot: The influence of memory on indoor environment exploration: A numerical study, Behavior Research Methods, 2015.
541 A.L. Pyayt; D.V. Shevchenko; A.P. Kozionov; I.I. Mokhov; B. Lang; V.V. Krzhizhanovskaya and P.M.A. Sloot: Combining Data-driven Methods with Finite Element Analysis for Flood Early Warning Systems, in International Conference On Computational Science, ICCS 2015: Computational Science at the Gates of Nature, Elsevier, 2015.

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