Publications by

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1 M.A. Yurkin and A.G. Hoekstra: Corrigendum to “The discrete dipole approximation: An overview and recent developments” [J. Quant. Spectrosc. Radiat. Transfer 106 (2007) 558â€"589], Journal of Quantitative Spectroscopy & Radiative Transfer, 2016.
2 O. Har Shemesh; R. Quax; A.G. Hoekstra and P.M.A. Sloot: Information geometric analysis of phase transitions in complex patterns: the case of the Gray-Scott reaction-diffusion model, Journal of Statistical Mechanics : Theory and Experiment, 2016.
3 L. Mountrakis; E. Lorenz and A.G. Hoekstra: Scaling of shear-induced diffusion and clustering in a blood-like suspension, Europhysics Letters, 2016.
4 A. Mizeranschi; D.J. Groen; J. Borgdorff; A.G. Hoekstra; B. Chopard and W. Dubitzky: Anatomy and Physiology of Multiscale Modeling and Simulation in Systems Medicine, 2016.
5 O. Har-Shemesh; R. Quax; Borja Miñano; A.G. Hoekstra and P.M.A. Sloot: Nonparametric estimation of Fisher information from real data, Physical Review E, 2016.
6 M.A. Yurkin; V.P. Maltsev and A.G. Hoekstra: Convergence of the discrete dipole approximation. I. Theoretical analysis: erratum, Journal of the Optical Society of America. A, Optics and Image Science, 2015.
7 L. Mountrakis; E. Lorenz; O. Malaspinas; S. Alowayyed; B. Chopard and A.G. Hoekstra: Parallel performance of an IB-LBM suspension simulation framework, Journal of Computational Science, 2015.
8 A.I. Svitenkov; S.A. Chivilikin; A.G. Hoekstra and A.V. Boukhanovsky: Fluid Simulations with Atomistic Resolution: Multiscale Model with Account of Nonlocal Momentum Transfer, in International Conference On Computational Science, ICCS 2015: Computational Science at the Gates of Nature, Elsevier, 2015.
9 V.V. Krzhizhanovskaya; D. Groen; B. Bosak and A.G. Hoekstra: Multiscale Modelling and Simulation Workshop: 12 Years of Inspiration, in International Conference On Computational Science, ICCS 2015: Computational Science at the Gates of Nature, Elsevier, 2015.
10 A.G. Hoekstra and Z. Zun: On the Possible Interaction Mechanism between Collateral Vessels and Restenosis, Procedia Computer Science, Elsevier, 2015.
11 H. Tahir; I. Niculescu; C. Bona-Casas; R.M.H. Merks and A.G. Hoekstra: An in silico study on the role of smooth muscle cell migration in neointimal formation after coronary stenting, Journal of the Royal Society Interface, 2015.
12 C.M. Amartruda; C. Bona-Casas; B. Keller; H. Tahir; G. Dubini; A.G. Hoekstra; D.R. Hose; P.V. Lawford; F. Migliavacca; A. Narracott and J. Gunn: From histology and imaging data to models for in-stent restenosis, The international journal of artificial organs, (submitted) 2014.
13 L. Mountrakis; E. Lorenz and A.G. Hoekstra: Validation of an efficient two-dimensional model for dense suspensions of red blood cells, International Journal of Modern Physics C, 2014.
14 H. Tahir; I. Niculescu; R. Merks and A.G. Hoekstra: A cellular Potts model of a stented arterial vessel to study the role of initial smooth muscle cells migration in neointimal development, in Virtual Physiological Human 2014, 2014.
15 A. Hoekstra; B. Chopard and P. Coveney: Multiscale modelling and simulation: a position paper, Philosophical Transactions of the Royal Society A - Mathematical, Physical and Engineering Sciences, 2014.
16 L. Mountrakis; E. Lorenz; O. Malaspinas; B. Chopard and A.G. Hoekstra: Looking into the transport of blood cells in flows without walls, in CCP2014: XXVI IUPAP Conference on Computational Physics: August 11-14, Boston, USA: abstracts: parallel sessions, 2014.
17 C. Bona-Casas; H. Tahir; J. Borgdorff and A.G. Hoekstra: A 3D Multiscale In-Stent Restenosis Model: A Milestone For The Next Generation of In-stent Restenosis Modelling, in Virtual Physiological Human 2014, 2014.
18 A. Hoekstra; B. Chopard and P. Lawford: Multi-Scale Modelling and Simulation, 2014. 978-0-19-965818-3.
19 B. Chopard; J. Borgdorff and A.G. Hoekstra: A framework for multi-scale modelling, Philosophical Transactions of the Royal Society A - Mathematical, Physical and Engineering Sciences, 2014.
20 J. Borgdorff; M. Ben Belgacem; C. Bona-Casas; L. Fazendeiro; D. Groen; O. Hoenen; A. Mizeranschi; J.L. Sutter; D. Coster; P.V. Coveney; W. Dubitzky; A.G. Hoekstra; P. Strand and B. Chopard: Performance of distributed multiscale simulations, Philosophical Transactions of the Royal Society A - Mathematical, Physical and Engineering Sciences, 2014.
21 J. Borgdorff; M. Mamonski; B. Bosak; K. Kurowski; M. Ben Belgacem; B. Chopard; D. Groen; P.V. Coveney and A.G. Hoekstra: Distributed multiscale computing with MUSCLE 2, the Multiscale Coupling Library and Environment, Journal of Computational Science, 2014.
22 S. Karabasov; D. Nerukh; A. Hoekstra; B. Chopard and P.V. Coveney: Multiscale modelling: approaches and challenges, Philosophical Transactions of the Royal Society A - Mathematical, Physical and Engineering Sciences, 2014.
23 H. Tahir; C. Bona-Casas; A. Narracott; J. Iqbal; J. Gunn; P.V. Lawford and A.G. Hoekstra: Endothelial repair process and its relevance to longitudinal neointimal tissue patterns: Comparing histology with in-silico modelling, Journal of the Royal Society Interface, (submitted) 2014.
24 C. Bona-Casas; J. Borgdorff; H. Tahir and A.G. Hoekstra: An off-lattice 3D model for in-­stent restenosis, 8th International Symposium on Biomechanics in Vascular Biology and Cardiovascular Disease, Rotterdam, Netherlands, 2013.
25 C. Bona-Casas; J. Borgdorff; H. Tahir and A.G. Hoekstra: First results on a 3D model for in-­stent restenosis, 19th Congress of the European Society of Biomechanics, Patras, Greece, 2013.
26 J. Borgdorff; J.-L. Falcone; E. Lorenz; C. Bona-Casas; B. Chopard and A.G. Hoekstra: Foundations of Distributed Multiscale Computing: Formalization, Specification, and Analysis, Journal of Parallel and Distributed Computing, vol. 73, nr 4 pp. 465-483. April 2013. ISSN 0743-7315. (DOI: 10.1016/j/jpdc.2012.12.011)
27 J. Borgdorff; M. Mamonski; B. Bosak; D. Groen; M.B. Belgacem; K. Kurowski and A.G. Hoekstra: Multiscale Computing with the Multiscale Modeling Library and Runtime Environment, in V. Alexandrov; M. Lees; V. Krzhizhanovskaya; J. Dongarra and P.M.A. Sloot, editors, Proceedings of the International Conference on Computational Science, ICCS 2013, pp. 1097-1105. 2013. ISSN 1877-0509. (DOI: 10.1016/j.procs.2013.05.275)
28 D.J. Groen; J. Borgdorff; C. Bona-Casas; J. Hetherington; R. Nash; S.J. Zasada; I. Saverchenko; M. Mamonski; K. Kurowski; M.O. Bernabeu; A.G. Hoekstra and P.V. Coveney: Flexible composition and execution of high performance, high fidelity multiscale biomedical simulations, Interface Focus, vol. 3, nr 2 2013.
29 O. Hoenen; L. Fazendeiro; B.D. Scott; J. Borgdorff; A.G. Hoekstra; P. Strand and D.P. Coster: Designing and running turbulence transport simulations using a distributed multiscale computing approach, in EPS 2013, Europhysics Conference Abstracts, 37D, 40th EPS Conference on Plasma Physics, European Physical Society, 2013.
30 E. Lorenz; L. Mountrakis and A.G. Hoekstra: Strong Anisotropy in Shear-induced RBC-enhanced Platelet Diffusion, in International Conference on the Discrete Simulation of Fluid Dynamics 2013, 22nd International Conference on the Discrete Simulation of Fluid Dynamics, 2013.
31 L. Mountrakis; E. Lorenz and A.G. Hoekstra: Where do the platelets go? A simulation study of fully resolved blood flow through aneurysmal vessels, Interface Focus, vol. 3, pp. 20120089. 2013. (DOI: 10.1098/rsfs.2012.0089)
32 L. Mountrakis; E. Lorenz and A.G. Hoekstra: Shape memory and membrane fluctuations of an RBC in shear flow, in International Conference on the Discrete Simulation of Fluid Dynamics 2013, 22nd International Conference on the Discrete Simulation of Fluid Dynamics, 2013.
33 H. Tahir; C. Bona-Casas and A.G. Hoekstra: Modelling the Effect of a Functional Endothelium on the Development of In-Stent Restenosis, PLoS One, vol. 8, nr 6 2013. (DOI: 10.1371/journal.pone.0066138)
34 H. Tahir; C. Bona-Casas and A.G. Hoekstra: Modelling in-stent restenosis: morphological differences in the tissue patterns based on the origin of endothelium recovery, 8th International Symposium on Biomechanics in Vascular Biology and Cardiovascular Disease, Rotterdam, Netherlands, 2013.
35 H. Tahir; C. Bona-Casas and A.G. Hoekstra: In-stent restenosis patterns based on the origin of endothelium recovery, 19th Congress of the European Society of Biomechanics, Patras, Greece, 2013.
36 J. Borgdorff; C. Bona-Casas; M. Mamonski; K. Kurowski; T. Piontek; B. Bosak; K.J. Rycerz; E. Ciepiela; T. Gubala; D. Harezlak; M.T. Bubak; E. Lorenz and A.G. Hoekstra: A distributed multiscale computation of a tightly coupled model using the Multiscale Modeling Language., International Conference on Computational Science 2012, pp. 596-605. Elsevier, 2012. (DOI: 10.1016/j.procs.2012.04.064)
37 J. Borgdorff; D.J. Groen; S. Ferlin; I. Saverchenko; J. Suter; A.G. Hoekstra and P.V. Coveney: Multiscale Simulations on Distributed European e-Infrastructures, Inside, vol. 10, nr 1 pp. 72-77. 2012.
38 D.J. Groen; J. Borgdorff; S.J. Zasada; C. Bona-Casas; J. Hetherington; R. Nash; A.G. Hoekstra and P.V. Coveney: A Distributed Infrastructure for Multiscale Biomedical Simulations, in VPH-2012, Londen, 2012.
39 Mountrakis,L.; E. Lorenz and A.G. Hoekstra: Modelling the transport behaviour of platelets in intracranial aneurysms, in VPH-2012, Londen, 2012.
40 H. Tahir; C. Bona-Casas and A.G. Hoekstra: Modelling the influence of re-endothelialization on in-stent restenosis, in VPH-2012, Londen, 2012.
41 J.M. Bernsdorf; G. Berti; B. Chopard; J. Hegewald; M. Krafczyk; E. Lorenz; A.G. Hoekstra and D. Wang: Towards Distributed Multiscale Simulation of Biological Processes, in Proceedings of the 7th IEEE conference on e-Science, e-Science Workshops (eScienceW), 2011 IEEE Seventh International Conference on, pp. 89-96. IEEE Computer Society Press, 2011. ISBN: 978-1-4673-0026-1. (DOI: 10.1109/eScienceW.2011.19)
42 J. Borgdorff; J.-L. Falcone; E. Lorenz; B. Chopard and A.G. Hoekstra: A principled approach to Distributed Multiscale Computing, from formalization to execution, in Proceedings of the 7th IEEE conference on e-Science, e-Science Workshops (eScienceW), 2011 IEEE Seventh International Conference on, pp. 97-104. IEEE Computer Society Press, Stockholm, Sweden, 2011. ISBN: 978-1-4673-0026-1. (DOI: 10.1109/eScienceW.2011.9)
43 A. Caiazzo; D.E. Evans; J.-L. Falcone; J. Hegewald; E. Lorenz; B. Stahl; D. Wang; J.M. Bernsdorf; B. Chopard; J. Gunn; D.R. Hose; M. Krafczyk; P.V. Lawford; R.H. Smallwood; D. Walker and A.G. Hoekstra: A Complex Automata approach for in-stent restenosis: Two-dimensional multiscale modelling and simulations, Journal of Computational Science, vol. 2, nr 1 pp. 9-17. 2011.
44 B. Chopard; J.-L. Falcone; A.G. Hoekstra and J. Borgdorff: A Framework for Multiscale and Multiscience Modeling and Numerical Simulations, in Calude,C; Kari,J; Petre,I and Rozenberg,G, editors, Unconventional Computation, pp. 2-8. Springer, 2011.
45 E. Lorenz and A.G. Hoekstra: Distributions of Cluster Sizes in Shear-Thickening, Suspensions derived from a Statistical Clustering Model, in DSFD 2010, 2011.
46 E. Lorenz and A.G. Hoekstra: Heterogeneous Multiscale Simulations of Suspension Flow, Multiscale Modeling & Simulation : A SIAM Interdisciplinary Journal, vol. 9, nr 4 pp. 1301-1326. 2011. (DOI: 10.1137/100818522)
47 E. Lorenz and A.G. Hoekstra: Heterogeneous multiscale simulations of suspension flow, Multiscale Modeling & Simulation : A SIAM Interdisciplinary Journal, vol. 9, nr 4 pp. 1301-1326. 2011.
48 V.P. Maltsev; A.G. Hoekstra and M.A. Yurkin: Optics of White Blood Cells: optical models, simulations, and experiments, in Tuchin,V.V, editor, Advanced Optical Flow Cytometry: Methods and Disease Diagnoses, First Edition, Wiley-VCH Verlag GmbH & Co, 2011.
49 S. Murtaza; A.G. Hoekstra and P.M.A. Sloot: Cellular Automata Simulations on a FPGA cluster, International Journal of High Performance Computing Applications, vol. 25, nr 2 pp. 193-204. 2011. (DOI: 10.1177/1094342010383138)
50 L.A. Naumov; A.G. Hoekstra and P.M.A. Sloot: Cellular automata models of tumour natural shrinkage, Physica A, vol. 390, nr 12 pp. 2283-2290. June 2011. ISSN 0378-4371. (DOI: 10.1016/j.physa.2011.02.006)
51 H. Tahir; A.G. Hoekstra; E. Lorenz; P.V. Lawford; D.R. Hose; J. Gunn and D.J.W. Evans: Multi-scale simulations of the dynamics of in-stent restenosis: impact of stent deployment and design, Interface Focus, vol. 1, nr 3 pp. 365-373. Royal Society, 2011. ISSN 2042-8901. (DOI: 10.1098/rsfs.2010.0024)
52 M.A. Yurkin and A.G. Hoekstra: The discrete-dipole-approximation code ADDA: Capabilities and known limitations, Journal of Quantitative Spectroscopy and Radiative Transfer, vol. 112, pp. 2234-2247. 2011.
53 J.-L. Falcone; B. Chopard and A.G. Hoekstra: MML: towards a Multiscale Modeling Language, in P.M.A. Sloot; G.D. van Albada and J. Dongarra, editors, ICCS 2010, (Proceedings of the $10^th$ International Conference on Computational Science, May 31 - June 2, Amsterdam) in series Procedia Computer Science, vol. 1, nr 1 pp. 819 - 826. Elsevier B.V., Amsterdam, May 2010. ISSN: 1877-0509. (DOI: 10.1016/j.procs.2010.04.089)
54 A.G. Hoekstra; J. Kroc and P.M.A. Sloot, editors: Simulating Complex Systems by Cellular Automata, in series Understanding Complex Systems, 384 pages. Springer, 2010. ISBN: 978-3-642-12202-6.
55 A.G. Hoekstra; J. Kroc and P.M.A. Sloot: Introduction to Modeling of Complex Systems Using Cellular Automata, in Hoekstra,A.G.; Kroc,J. and Sloot,P.M.A., editors, Simulating Complex Systems by Cellular Automata, pp. 1-16. Springer, 2010.
56 A.G. Hoekstra; A. Caiazzo; E. Lorenz; J.-L. Falcone and B. Chopard: Complex Automata: Multi-scale Modeling with Coupled Cellular Automata, in Hoekstra,A.G.; Kroc,J. and Sloot,P.M.A., editors, Simulating Complex Systems by Cellular Automata, in series Understanding Complex Systems, pp. 29-57. Springer, 2010.
57 A.G. Hoekstra: Multiscale Coupling of a Lattice Boltzmann Simulation of Blood Flow to Cell- and Tissue-Level Processes: the Case of In-Stent Restenosis, in J.C.F. Pereira and A. Sequeira, editors, Proceedeings of the V European Conference on Computational Fluid Dynamics, (on-line only) V European Conference on Computational Fluid Dynamics: ECCOMAS CFD 2010, 8 pages. ECCOMAS, Lisbon, Portugal, 2010.
58 A.G. Hoekstra; P.V. Lawford and D.R. Hose: Modelling and simulating in-stent restenosis with complex automata, in Conference abstracts VPH 2010, 1st Virtual Physiological Human Conference, 1st Virtual Physiological Human Conference (VPH 2010), Brussels, Belgium, pp. 222-224. VPH Network of Excellence, 2010.
59 A.G. Hoekstra and P.V. Coveney: Towards distributed multiscale computing for the VPH, in Conference abstracts VPH 2010, 1st Virtual Physiological Human Conference, 1st Virtual Physiological Human Conference (VPH 2010), Brussels, Belgium, pp. 198-200. VPH Network of Excellence, 2010.
60 L.A. Naumov; A.G. Hoekstra and P.M.A. Sloot: The influence of mitoses rate on growth dynamics of a cellular automata model of tumour growth, in P.M.A. Sloot; G.D. van Albada and J. Dongarra, editors, ICCS 2010, in series Procedia Computer Science, vol. 1, nr 1 pp. 971 - 978. Elsevier B.V., Amsterdam, May 2010. ISSN: 1877-0509. (DOI: 10.1016/j.procs.2010.04.107)
61 E. van der Pol; A.G. Hoekstra; A. Sturk; C. Otto; T.G. van Leeuwen and R. Nieuwland: Optical and non-optical methods for detection and characterization of microparticles and exosomes, Journal of Thrombosis and Haemostasis, vol. 8, nr 12 pp. 2596-2607. 2010. (DOI: 10.1111/j.1538-7836.2010.04074.x)
62 P.M.A. Sloot and A.G. Hoekstra: Multi-scale modelling in computational biomedicine, Brief in Bioinform, vol. 11, nr 1 pp. 142-152. Oxford University Press, 2010. (DOI: 10.1093/bib/bbp038)
63 G.J. Streekstra; J.G.G. Dobbe and A.G. Hoekstra: Quantification of the fraction poorly deformable red blood cells using ektacytometry, Optics Express, vol. 18, nr 13 pp. 14173-14182. 2010. (DOI: 10.1364/OE.18.014173)
64 M.A. Yurkin; M. Min and A.G. Hoekstra: Application of the discrete dipole approximation to very large refractive indices: Filtered coupled dipoles revived, Physical Review. E Statistical Nonlinear and Soft Matter Physics, vol. 82, nr 3 pp. 036703+12. 2010. (DOI: 10.1103/PhysRevE.82.036703)
65 M.A. Yurkin; D. de Kanter and A.G. Hoekstra: Accuracy of the discrete dipole approximation for simulation of optical properties of gold nanoparticles, Journal of Nanophotonics, vol. 4, pp. 041585+15. SPIE, 2010. (DOI: 10.1117/1.3335329)
66 M.A. Yurkin; D. de Kanter and A.G. Hoekstra: Accuracy of the discrete dipole approximation for gold nanoparticles, in M.I. Mishchenko; Y. Yatskiv; V.K. Rosenbush and G. Videen, editors, NATO Advanced Study Institute on "Special Detection Technique (Polarimetry) and Remote Sensing", (Abstract) pp. 118-118. Nato, Kyiv, Ukraine, September 2010.
67 M.A. Yurkin; O.M. Yurkina and A.G. Hoekstra: Features and capabilities of the discrete dipole approximation code ADDA, in M.I. Mishchenko; Y. Yatskiv; V.K. Rosenbush and G. Videen, editors, NATO ASI on Special Detection Technique (Polarimetry) and Remote Sensing, (abstract) pp. 119-119. Nato, September 2010.
68 L. Axner; A.G. Hoekstra; A. Jeays; P.V. Lawford; D.R. Hose and P.M.A. Sloot: Simulations of time harmonic blood flow in the Mesenteric artery: comparing finite element and lattice Boltzmann methods, BioMedical Engineering OnLine, (on-line only; PubMedID = 19799782) vol. 8, nr 1 pp. 23+8. October 2009. ISSN 1475-925X. (DOI: 10.1186/1475-925X-8-23)
69 A. Caiazzo; D.E. Evans; J.-L. Falcone; J. Hegewald; E. Lorenz; B. Stahl; D. Wang; J.M. Bernsdorf; B. Chopard; J. Gunn; D.R. Hose; M. Krafczyk; P.V. Lawford; R.H. Smallwood; D. Walker and A.G. Hoekstra: Towards a Complex Automata Multiscale Model of In-Stent Restenosis, in G. Allen; J. Nabrzyski; E. Seidel; G.D. van Albada; J.J. Dongarra and P.M.A. Sloot, editors, Computational Science - ICCS 2009: 9th International Conference, Baton Rouge, LA, USA, Proceedings, Part I, International Conference on Computational Science 2009 (ICCS 2009), Baton Rouge, LA, USA, in series Lecture Notes in Computer Science, vol. 5544, pp. 705-714. Springer, Berlin, Heidelberg, May 2009. ISBN-13: 978-3-642-01969-2. (DOI: 10.1007/978-3-642-01970-8_70)
70 A. Caiazzo; J.-L. Falcone; B. Chopard and A.G. Hoekstra: Asymptotic analysis of Complex Automata models for reaction-diffusion systems, Applied Numerical Mathematics, vol. 59, nr 8 pp. 2023-2034. 2009. ISSN 0168-9274. (DOI: 10.1016/j.apnum.2009.04.001)
71 D.J.W. Evans; D. Walker; J. Gunn; M. Krafczyk; B. Chopard; J.M. Bernsdorf; A.G. Hoekstra; D.R. Hose and P.V. Lawford: COAST: Multi-scale Simulation of Restenosis, in Bioengineering 2009, (abstract) Bioengineering 2009, pp. 122-122. Oxford, 2009.
72 J.B.W. Geerdink and A.G. Hoekstra: Comparing entropic and multiple relaxation time lattice Boltzmann methods for blood flow simulations, Int. J. Mod. Phys. C, vol. 20, nr 5 pp. 721-733. 2009. (DOI: 10.1142/S0129183109013947)
73 E. Lorenz; A.G. Hoekstra and A. Caiazzo: Lees-Edwards boundary conditions for lattice Boltzmann suspension simulations, Physical Review E (Statistical, Nonlinear, and Soft Matter Physics), vol. 79, nr 3 pp. 036706++8. APS, 2009. (DOI: 10.1103/PhysRevE.79.036706)
74 E. Lorenz; A. Caiazzo and A.G. Hoekstra: Corrected momentum exchange method for lattice Boltzmann simulations of suspension flow, Physical Review E (Statistical, Nonlinear, and Soft Matter Physics), vol. 79, nr 3 pp. 036705++9. APS, 2009. (DOI: 10.1103/PhysRevE.79.036705)
75 S. Murtaza; A.G. Hoekstra and P.M.A. Sloot: Compute Bound and I/O Bound Cellular Automata Simulations on FPGA Logic, ACM Trans. Reconfigurable Technol. Syst., vol. 1, nr 4 pp. 23:1-23:21. ACM, New York, NY, USA, January 2009. ISSN 1936-7406. (DOI: 10.1145/1462586.1462592)
76 D.I. Strokotov; M.A. Yurkin; K.V. Gilev; D.R. van Bockstaele; A.G. Hoekstra; N.B. Rubtsov and V.P. Maltsev: Is there a difference between T- and B-lymphocyte morphology?, Journal of Biomedical Optics, vol. 14, nr 6 pp. 064036+12. SPIE, 2009. (DOI: 10.1117/1.3275471)
77 L. Axner; J.M. Bernsdorf; T. Zeiser; P. Lammers; J. Linxweiler and A.G. Hoekstra: Performance evaluation of a parallel sparse lattice Boltzmann solver, Journal of Computational Physics, vol. 227, nr 10 pp. 4895-4911. May 2008. (DOI: 10.1016/j.jcp.2008.01.013)
78 A. Caiazzo; J.-L. Falcone; B. Chopard and A.G. Hoekstra: Scale-Splitting Error in Complex Automata models for Reaction-Diffusion Systems, in M.T. Bubak; G.D. van Albada; J.J. Dongarra and P.M.A. Sloot, editors, Computational Science - ICCS 2008: 8th International Conference, Krakow, Poland, Proceedings, Part II, in series Lecture Notes in Computer Science, vol. 5102, pp. 291-300. Springer, Berlin, Heidelberg, June 2008. 978-3-540-69386-4.
79 A. Caiazzo; J.-L. Falcone; B. Chopard and A.G. Hoekstra: Error Investigations in Complex Automata models for Reaction-Diffusion systems, in H. Umeo; S. Morishita; K. Nishinari; T. Komatsuzaki and S. Bandini, editors, Cellular Automata, 8th International Conference on Cellular Automata for Reseach and Industry, ACRI 2008, 8th International Conference on Cellular Automata for Reseach and Industry (ACRI 2008), Yokohama, Japan, in series Lecture Notes in Computer Science, vol. 5191, pp. 260-267. Springer, 2008. ISBN 978-3-540-79991-7.
80 A.V. Chernyshev; P.A. Tarasov; K.A. Semianov; V.M. Nekrasov; A.G. Hoekstra and V.P. Maltsev: Erythrocyte lysis in isotonic solution of ammonium chloride: Theoretical modelling and experimental verification, Journal of Theoretical Biology, vol. 251, nr 1 pp. 93-107. 2008. (DOI: 10.1016/j.jtbi.2007.10.016)
81 B. Chopard; J.-L. Falcone; R. Razakarinina; A.G. Hoekstra and A. Caiazzo: On the collision-propagation and gather-update formulations of a Cellular Automata rule, in H. Umeo; S. Morishita; K. Nishinari; T. Komatsuzaki and S. Bandini, editors, Cellular Automata, 8th International Conference on Cellular Automata for Reseach and Industry, ACRI 2008, in series Lecture Notes in Computer Science, vol. 5191, pp. 144-151. Springer, 2008. ISBN 978-3-540-79991-7.
82 D.J.W. Evans; A.G. Hoekstra; J. Gunn; D. Walker; D.R. Hose; R.H. Smallwood; B. Chopard; M. Krafczyk; J.M. Bernsdorf and P.V. Lawford: Multiscale Modelling: Application of the Complex Automata Simulation Technique (COAST), in Proceedings of the European Biomechanics Society conference 2008, 2008.
83 D.J.W. Evans; P.V. Lawford; J. Gunn; D. Walker; D.R. Hose; R.H. Smallwood; B. Chopard; M. Krafczyk; J.M. Bernsdorf and A.G. Hoekstra: The Application of Multiscale Modelling to the Process of Development and Prevention of Stenosis in a Stented Coronary Artery, Phil. Trans. Roy. Soc A, vol. 366, nr 1879 pp. 3343-3360. 2008. (DOI: 10.1098/rsta.2008.0081)
84 J. Hegewald; M. Krafczyk; J. Tölke; A.G. Hoekstra and B. Chopard: An Agent-Based Coupling Platform for Complex Automata, in M.T. Bubak; G.D. van Albada; J.J. Dongarra and P.M.A. Sloot, editors, Computational Science - ICCS 2008: 8th International Conference, Krakow, Poland, Proceedings, Part II, in series Lecture Notes in Computer Science, vol. 5102, pp. 227-233. Springer, Berlin, Heidelberg, June 2008. 978-3-540-69386-4.
85 A.G. Hoekstra: Book review: Optical Polarization in Biomedical Applications, V.V. Tuchin, L.V. Wang, D.A. Zimnyakov, Journal of Quantitative Spectroscopy & Radiative Transfer, 2008.
86 A.G. Hoekstra; J.-L. Falcone; A. Caiazzo and B. Chopard: Multi-scale Modeling with Cellular Automata: The Complex Automata Approach, in H. Umeo; S. Morishita; K. Nishinari; T. Komatsuzaki and S. Bandini, editors, Cellular Automata, 8th International Conference on Cellular Automata for Reseach and Industry, ACRI 2008, 8th International Conference on Cellular Automata for Reseach and Industry (ACRI 2008), Yokohama, Japan, in series Lecture Notes in Computer Science, vol. 5191, pp. 192-199. Springer, 2008. ISBN 978-3-540-79991-7.
87 A.G. Hoekstra; S.F. Portegies Zwart; M.T. Bubak and P.M.A. Sloot: Towards Distributed Petascale Computing, Chapter 8, in D.A. Bader, editor, Petascale Computing: Algorithms and Applications, pp. 147-164. Chapman & Hall, mar 2008. ISBN: 9781584889090, ISBN 10: 1584889098.
88 V.V. Krzhizhanovskaya and A.G. Hoekstra: Simulation of Multiphysics Multiscale Systems, 5th International Workshop, in M.T. Bubak; G.D. van Albada; J.J. Dongarra and P.M.A. Sloot, editors, Computational Science - ICCS 2008: 8th International Conference, Krakow, Poland, Proceedings, Part II, (editorial) in series Lecture Notes in Computer Science, vol. 5102, pp. 165-166. Springer, Berlin, Heidelberg, June 2008. 978-3-540-69386-4.
89 V.V. Krzhizhanovskaya and A.G. Hoekstra: Special Issue on Simulation of Multiphysics Multiscale Systems, International Journal for Multiscale Computational Engineering, (Guest editorship and Preface) 2008. ISSN 1543-1649. (DOI: 10.1615/IntJMultCompEng.v6.i1)
90 S. Murtaza; A.G. Hoekstra and P.M.A. Sloot: Floating point based Cellular Automata simulations using a dual FPGA-enabled system, in Proceedings of the High Performance Reconfigurable Computing Technology and Applications, pp. 1-8. IEEE, 2008. ISBN 978-1-4244-2826-7. (DOI: 10.1109/HPRCTA.2008.4745686)
91 D.Y. Orlova; M.A. Yurkin; A.G. Hoekstra and V.P. Maltsev: Light scattering by neutrophils: model, simulation, and experiment, Journal of Biomedical Optics, vol. 13, nr 5 pp. 054057+7. September 2008. (DOI: 10.1117/1.2992140)
92 M.A. Yurkin; M. Min and A.G. Hoekstra: Application of the discrete dipole approximation to extreme refractive indices: filtered coupled dipoles revived, in Proceedings of the 11th Conference on Electromagnetic and Light Scattering, (extended abstract) 11th Electromagnetic & Light Scattering Conference (els-XI), Hatfield, UK, pp. 109-112. University of Hertfordshire, 2008.
93 M.A. Yurkin; D. de Kanter and A.G. Hoekstra: Study of light scattering by a granulated coated sphere - a model of granulated blood cells, in Proceedings of the 11th Conference on Electromagnetic and Light Scattering, (extended abstract) 11th Electromagnetic & Light Scattering Conference (els-XI), Hatfield, UK, pp. 299-302. University of Hertfordshire, 2008.
94 L. Axner; A.G. Hoekstra and P.M.A. Sloot: Simulating Time Harmonic Flows with the Lattice Boltzmann Method, Phys. Rev. E, pp. 036709+7. 2007.
95 L. Axner; J. Lätt; A.G. Hoekstra; B. Chopard and P.M.A. Sloot: Simulating Time Harmonic Flows with the Regularized L-BGK Method, Int. J. of Mod. Phys. C, vol. 18, nr 4 pp. 661-666. 2007.
96 A.G. Hoekstra; V.P. Maltsev and G. Videen: Optics of Biological Particles, Springer, London, 2007. ISBN 978-1-4020-5501-0.
97 A.G. Hoekstra; E. Lorenz; J.-L. Falcone and B. Chopard: Towards a Complex Automata Framework for Multi-Scale Modeling: Formalism and the Scale Separation Map, in Computational Science - ICCS 2007: 7th International Conference, Beijing, China, Proceedings, Part I, in series Lecture Notes in Computer Science, vol. 4487, pp. 922-930. Springer, Berlin, Heidelberg, May 2007. ISBN: 978-3-540-72583-1.
98 A.G. Hoekstra and P.M.A. Sloot: Modelleren en Simuleren, in T.M.A. Bemelmans; M. van Keulen; R.J. Kusters and M. Looijen, editors, ICT-Zakboek, 3e druk, (in Dutch) in series PBNA Polyzakboekjes, pp. 239-255. Reed Business Information, Den Haag, 2007. ISBN 978-90-6228-671-3.
99 A.G. Hoekstra; E. Lorenz; J.-L. Falcone and B. Chopard: Toward a Complex Automata Formalism for Multi-Scale Modeling, International Journal for Multiscale Computational Engineering, vol. 5, nr 6 pp. 491-502. Begell House, 2007. ISSN 1543-1649.
100 S. Murtaza; A.G. Hoekstra and P.M.A. Sloot: Performance evaluation of FPGA-based Cellular Automata accelerators, in Proceedings of the Third Annual Reconfigurable Systems Summer Institute (RSSI'07), (on line proceedings) 7 pages. Reconfigurable Systems Summer Institute, National Center for Supercomputing Applications, Urbana, Illinois, 2007.
101 S. Murtaza; A.G. Hoekstra and P.M.A. Sloot: Performance Modeling of 2D Cellular Automata on FPGA, in A. van Genderen, editor, International Conference on Field Programmable Logic and Applications, FPL 2007, pp. 74-78. IEEE, Amsterdam, August 2007. ISBN: 978-1-4244-1060-6. (DOI: 10.1109/FPL.2007.4380628)
102 A. Penttilä; E. Zubko; K. Lumme; K. Muinonen; M.A. Yurkin; B.T. Draine; J. Rahola; A.G. Hoekstra and Y. Shkuratov: Comparison between discrete dipole implementations and exact techniques, J. Quant. Spectr. Rad. Transf., vol. 106, pp. 417-436. 2007. (DOI: 10.1016/j.jqsrt.2007.01.026)
103 K.A. Semyanov; A.E. Zharinov; P.A. Tarasov; M.A. Yurkin; I.G. Skribunov; D.R. van Bockstaele; A.G. Hoekstra and V.P. Maltsev: Optics of leucocytes, in A.G. Hoekstra; V.P. Maltsev and G. Videen, editors, Optics of Biological Particles, pp. 253-264. Springer, London, 2007. ISBN 978-1-4020-5501-0.
104 K.A. Semyanov; P.A. Tarasov; M.A. Yurkin; A.G. Hoekstra and V.P. Maltsev: Characterization of native red blood cell morphology by scanning flow cytometry, in 8th International Congress on Optical Particle Characterization, pp. 56. Graz, Austria, July 2007.
105 P.M.A. Sloot and A.G. Hoekstra: Modeling Dynamic Systems with Cellular Automata, Chapter 21, in P.A. Fishwick, editor, Handbook of Dynamic System Modeling, pp. 1-20. Chapman & Hall/CRC, 2007. ISBN 1-58488-565-3.
106 P.A. Tarasov; M.A. Yurkin; P.A. Avrorov; K.A. Semyanov; A.G. Hoekstra and V.P. Maltsev: Optics of erythrocytes, in A.G. Hoekstra; V.P. Maltsev and G. Videen, editors, Optics of Biological Particles, pp. 231-246. Springer, London, 2007. ISBN 978-1-4020-5501-0.
107 M.A. Yurkin; K.A. Semyanov; V.P. Maltsev and A.G. Hoekstra: Light scattering by granulated spheres applied to discriminate subtypes of granulated blood cells, in International Conference on Laser Applications in Life Sciences 2007, (abstract) pp. TuL07-II-3. Moscow, Russia, June 2007.
108 M.A. Yurkin; A.G. Hoekstra; R.S. Brock and J.Q. Lu: Systematic comparison of the discrete dipole approximation and the finite difference time domain method for large dielectric scatterers, Optics Express, vol. 15, nr 26 pp. 17902-17911. Dec 2007.
109 M.A. Yurkin; A.G. Hoekstra; R.S. Brock and J.Q. Lu: Systematic comparison of the discrete dipole approximation and the finite difference time domain method, in The 10th Conference on Electromagnetic and Light Scattering, pp. 249-252. Bodrum, Turkey, June 2007.
110 M.A. Yurkin; K.A. Semyanov; V.P. Maltsev and A.G. Hoekstra: Discrimination of granulocyte subtypes from light scattering: theoretical analysis using a granulated sphere model, Optics Express, vol. 15, nr 25 pp. 16561-16580. 2007.
111 M.A. Yurkin; V.P. Maltsev and A.G. Hoekstra: The discrete dipole approximation for simulation of light scattering by particles much larger than the wavelength, J. Quant. Spectr. Rad. Transf., vol. 106, pp. 546-557. 2007.
112 M.A. Yurkin and A.G. Hoekstra: The discrete dipole approximation: an overview and recent developments, J. Quant. Spectr. Rad. Transf., vol. 106, pp. 558-589. 2007.
113 L. Abrahamyan; A.G. Hoekstra and P.M.A. Sloot: Choosing Optimal L-BGK Simulation Parameters for Time Harmonic Flows, in Proceedings Discrete Simulation of Fluid Dynamics DSFD2006, Geneva, Switserland, (abstract) 2006.
114 L. Abrahamyan; J.M. Bernsdorf; T. Zeiser; P. Lammers; A.G. Hoekstra and P.M.A. Sloot: MPI parallelization and performance aspects of a graph based LB flow solver, in Proceedings Discrete Simulation of Fluid Dynamics DSFD2006, Geneva, Switserland, (abstract) 2006.
115 A.M.M. Artoli; A.G. Hoekstra and P.M.A. Sloot: Mesoscopic simulations of systolic flow in the Human abdominal aorta, Journal of Biomechanics, vol. 39, nr 5 pp. 873-884. 2006. (DOI: 10.1016/j.jbiomech.2005.01.033)
116 A.M.M. Artoli; A.G. Hoekstra and P.M.A. Sloot: Optimizing lattice Boltzmann simulations for unsteady flows, Computers & Fluids, vol. 35, nr 2 pp. 227-240. February 2006. (DOI: 10.1016/j.compfluid.2004.12.002)
117 A.G. Hoekstra; V.P. Maltsev and G. Videen: Preface to special issue dedicated to the Optical Properties of Biological Cells, J. Quant. Sectr. Rad. Transf., vol. 102, nr 1 pp. 1-2. Nov. 2006.
118 A.G. Hoekstra; B. Chopard; P.V. Lawford; D.R. Hose; M. Krafczyk and J.M. Bernsdorf: Introducing Complex Automata for Modelling Multi-Scale Complex Systems, in proceedings European Complex Systems Conference 2006, (CD) European Complex Systems Society, Oxford, UK, September 2006. ISBN 0-9554123-0-7.
119 I.V. Kolesnikova; S.V. Potapov; M.A. Yurkin; A.G. Hoekstra; V.P. Maltsev and K.A. Semyanov: Determination of volume, shape and refractive index of individual blood platelets, J. Quant. Spectr. Rad. Transf., vol. 102, nr 1 pp. 37-45. Nov. 2006.
120 R.M.H. Merks; A.G. Hoekstra; J.A. Kaandorp; P.M.A. Sloot and P. Hogeweg: Problem-Solving Environments for Biological Morphogenesis, Comput. Sci. Eng, vol. 8, nr 1 pp. 61-72. 2006. (DOI: 10.1109/MCSE.2006.11)
121 A. Penttilä; E. Zubko; K. Lumme; K. Muinonen; M.A. Yurkin; Y. Shkuratov and A.G. Hoekstra: Comparison between discrete dipole and exact techniques, in Proceedings of the 9th Conference on Electromagnetic and Light Scattering by Nonspherical Particles: Theory, Measurement and Applications, pp. 227-230. St.Petersburg,Russia, June 2006. ISBN 5-9651-0210-0.
122 M.A. Yurkin; V.P. Maltsev and A.G. Hoekstra: Convergence of the discrete dipole approximation. I. Theoretical analysis, Journal of Optical Society of America A, vol. 23, nr 10 pp. 2578-2591. 2006.
123 M.A. Yurkin; V.P. Maltsev and A.G. Hoekstra: Convergence of the discrete dipole approximation. II. An extrapolation technique to increase the accuracy, Journal of Optical Society of America A, vol. 23, nr 10 pp. 2592-2601. 2006.
124 M.A. Yurkin; V.P. Maltsev and A.G. Hoekstra: Can the Discrete Dipole Approximation Simulate Scattering of Particles with Size Parameter equal to 100?, in Proceedings of 9th International Conference on Electromagnetic and Light Scattering by Non-Spherical Particles, pp. 279-282. Saint Peterburg, Russia, June 2006. ISBN 5-9651-0210-0.
125 M.A. Yurkin and A.G. Hoekstra: An Extrapolation Technique to Increase the Accuracy of The Discrete Dipole Approximation, in Proceedings of 9th International Conference on Electromagnetic and Light Scattering by Non-Spherical Particles, pp. 283-286. Saint Peterburg, Russia, June 2006. ISBN 5-9651-0210-0.
126 L. Abrahamyan; J.A. Schaap; A.G. Hoekstra; D.P. Shamonin; F.M.A. Box; R.J. van der Geest; J.H.C. Reiber and P.M.A. Sloot: A Problem Solving Environment for Image-Based Computational Hemodynamics, in V.S. Sunderam; G.D. van Albada; P.M.A. Sloot and J.J. Dongarra, editors, Computational Science - ICCS 2005: 5th International Conference, Atlanta, GA, USA, Proceedings, Part I, in series Lecture Notes in Computer Science, vol. 3514, pp. 287-294. Springer, Berlin, Heidelberg, May 2005. ISBN 3-540-26032-3.
127 A.G. Hoekstra and P.M.A. Sloot: Introducing Grid Speedup Gamma: A Scalability Metric for Parallel Applications on the Grid, in P.M.A. Sloot; A.G. Hoekstra; T. Priol; A. Reinefeld and M.T. Bubak, editors, Advances in Grid Computing - EGC 2005, in series Lecture Notes in Computer Science, vol. 3470, pp. 245-249. Springer, Berlin, Heidelberg, February 14-16 2005. ISBN 3-540-26918-5.
128 A.G. Hoekstra: Image-based computational hemodynamics with the Lattice Boltzmann Method, in K.J. Bathe, editor, Computational Fluid and Solid Mechanics 2005, pp. 672-675. Elsevier Ltd, 2005.
129 P.M.A. Sloot; C.A.B. Boucher; M.T. Bubak; A.G. Hoekstra; P. Plaszczak; A. Posthumus; D.A.M.C. van de Vijver; S. Wesner and A. Tirado Ramos: VIROLAB - A Virtual Laboratory for Decision Support in Viral Diseases Treatment, in Cracow Grid Workshop 2005, (best poster award) pp. 33+1. Cracow, Poland, November 2005.
130 P.M.A. Sloot; A.G. Hoekstra; T. Priol; A. Reinefeld and M.T. Bubak: Advances in Grid Computing - EGC 2005, in series Lecture Notes in Computer Science, vol. 3470, Springer, Berlin, Heidelberg, February 14-16 2005. ISBN 3-540-26918-5.
131 P.M.A. Sloot; J.A. Kaandorp and A.G. Hoekstra: Towards Virtual Physiological Human: Multilevel Modelling and Simulation of the Human Anatomy and Phsyiology, November 2005.
132 A. Tirado Ramos; D.P. Shamonin; R.M. Shulakov; D.J. Groen; A.G. Hoekstra; G.D. van Albada; E.V. Zudilova and P.M.A. Sloot: Interactive Problem Solving Environments on the Grid for Image-based Computational Haemodynamics, in The CrossGrid Book, (accepted 15 January 2004) The European CrossGrid Consortium, 2005.
133 M.A. Yurkin; D. de Kanter and A.G. Hoekstra: Applicability of effective medium approximation to light scattering by granulated biological cells - first results, in Proceedings of the NATO Advanced Research Workshop: Optics of Biological Particles, pp. 46-47. Novosibirsk,Russia, October 2005. ISBN 5-98901-002-8.
134 M.A. Yurkin; K.A. Semyanov; A.G. Hoekstra and V.P. Maltsev: Experimental and Theoretical Study of Light Scattering by Individual Mature Red Blood Cells with Scanning Flow Cytometry and Discrete Dipole Approximation, in Proceedings of the 8th Conference on Electromagnetic and Light Scattering by Nonspherical Particles: Theory, Measurement and Applications, pp. 333-336. Salobrena, Spain, May 2005.
135 M.A. Yurkin; K.A. Semyanov; P.A. Tarasov; A.V. Chernyshev; A.G. Hoekstra and V.P. Maltsev: Experimental and theoretical study of light scattering by individual mature red blood cells with scanning flow cytometry and discrete dipole approximation, Applied Optics, vol. 44, nr 25 pp. 5249-5256. 2005.
136 M.A. Yurkin and A.G. Hoekstra: Capabilities of the discrete dipole approximation for simulation light scattering by biological cells, in Proceedings of the NATO Advanced Research Workshop: Optics of Biological Particles, Novosibirsk, Russia, pp. 19-20. Novosibirsk,Russia, October 2005. ISBN 5-98901-002-8.
137 A.M.M. Artoli; L. Abrahamyan and A.G. Hoekstra: Accuracy versus Performance in Lattice Boltzmann BGK Simulations of Systolic Flows, in M.T. Bubak; G.D. van Albada; P.M.A. Sloot and J.J. Dongarra, editors, Computational Science - ICCS 2004: 4th International Conference, Kraków, Poland, June 6-9, 2004, Proceedings, Part IV, in series Lecture Notes in Computer Science, vol. 3039, pp. 548-555. Springer Verlag, Heidelberg, June 2004. ISBN 3-540-22129-8.
138 A.M.M. Artoli; B.D. Kandhai; H.C.J. Hoefsloot; A.G. Hoekstra and P.M.A. Sloot: Lattice BGK simulations of flow in a symmetric bifurcation, Future Generation Computer Systems, vol. 20, nr 6 pp. 909-916. 2004.
139 B. Chopard and A.G. Hoekstra: Special Issue: Computational Science of Lattice Boltzmann Modelling (Editorial), Future Generation Computer Systems, August 2004.
140 B. Chopard and A.G. Hoekstra: Guest Editorial, Computational science of lattice Boltzmann modelling, Future Generation Computer Systems, vol. 20, nr 6 pp. 907-908. August 2004.
141 A.G. Hoekstra; J. van 't Hoff; A.M.M. Artoli and P.M.A. Sloot: Unsteady flow in a 2D elastic tube with the LBGK method, Future Generation Computer Systems, vol. 20, nr 6 pp. 917-924. 2004. (DOI: 10.1016/j.future.2003.12.003)
142 R.M.H. Merks; A.G. Hoekstra; J.A. Kaandorp and P.M.A. Sloot: Polyp oriented modelling of coral growth, Journal of Theoretical Biology, vol. 228, nr 4 pp. 559-576. 2004.
143 K.A. Semyanov; P.A. Tarasov; A.E. Zharinov; A.V. Chernyshev; A.G. Hoekstra and V.P. Maltsev: Single-Particle Sizing from Light Scattering by Spectral Decomposition, Applied Optics, vol. 43, nr 26 pp. 5110-5115. September 2004.
144 P.M.A. Sloot and A.G. Hoekstra: Virtual Vascular Surgery on the Grid, ERCIM news, October 2004.
145 P.M.A. Sloot; A. Tirado Ramos; A.G. Hoekstra and M.T. Bubak: An Interactive Grid Environment for Non-Invasive Vascular Reconstruction, in 2nd International Workshop on Biomedical Computations on the Grid (BioGrid'04), in conjunction with Fourth IEEE/ACM International Symposium on Cluster Computing and the Grid (CCGrid2004), (CD-ROM IEEE Catalog # 04EX836C) IEEE, Chicago, Illinois, USA, April 2004. ISBN 0-7803-8431-8.
146 P.M.A. Sloot; B. Chopard and A.G. Hoekstra: Cellular Automata: 6th International Conference on Cellular Automata for Research and Industry, ACRI 2004, Amsterdam, The Netherlands, October 25-28, 2004, in series Lecture Notes in Computer Science, vol. 3305, Springer Verlag, Heidelberg, October 2004. ISBN: 3-540-23596-5.
147 A. Tirado Ramos; P.M.A. Sloot; A.G. Hoekstra and M.T. Bubak: An Integrative Approach to High-Performance Biomedical Problem Solving Environments on the Grid, Parallel Computing, (special issue on High-Performance Parallel Bio-computing) vol. 30, nr 9-10 pp. 1037-1055. (C.-H. Huang and S. Rajasekaran, editors), 2004.
148 A. Tirado Ramos; P.M.A. Sloot; A.G. Hoekstra and M.T. Bubak: An Integrative Approach to High-Performance Biomedical Problem Solving Environments on the Grid, Parallel Computing, (special issue on High-Performance Parallel Bio-computing) vol. 30, nr 9-10 pp. 1037-1055. (C.-H. Huang and S. Rajasekaran, editors), 2004.
149 A.M.M. Artoli; A.G. Hoekstra and P.M.A. Sloot: Accelerated Lattice BGK method for unsteady simulations through Mach number annealing, International Journal of Modern Physics C, vol. 14, nr 6 pp. 835-847. 2003.
150 A.M.M. Artoli; A.G. Hoekstra and P.M.A. Sloot: Simulation of a Systolic Cycle in a Realistic Artery with the Lattice Boltzmann BGK Method, International Journal of Modern Physics B, vol. 17, nr 1&2 pp. 95-98. World Scientific Publishing Company, January 2003.
151 A.M.M. Artoli; B.D. Kandhai; H.C.J. Hoefsloot; A.G. Hoekstra and P.M.A. Sloot: Lattice Boltzmann, a Robust and Accurate Solver for Interactive Computational Hemodynamics, in P.M.A. Sloot; D. Abramson; A.V. Bogdanov; J.J. Dongarra; A.Y. Zomaya and Y.E. Gorbachev, editors, Computational Science - ICCS 2003, Melbourne, Australia and St. Petersburg, Russia, Proceedings Part I, in series Lecture Notes in Computer Science, vol. 2657, pp. 1034-1043. Springer Verlag, June 2003. ISBN 3-540-40194-6.
152 A.G. Hoekstra and V.A. Babenko: Accuracy of internal fields inside spheroids in DDA-simulations of light scattering, in T. Wriedt, editor, Electromagnetic and Light Scattering Theory and Applications VII, pp. 123-126. Bremen, 2003. ISBN 3-88722-579-1.
153 A.G. Hoekstra; J. van 't Hoff; A.M.M. Artoli and P.M.A. Sloot: Lattice BGK Simulations of Unsteady Flow in a 2D Elastic Tube, in P.M.A. Sloot; D. Abramson; A.V. Bogdanov; J.J. Dongarra; A.Y. Zomaya and Y.E. Gorbachev, editors, Computational Science - ICCS 2003, Melbourne, Australia and St. Petersburg, Russia, Proceedings Part I, in series Lecture Notes in Computer Science, vol. 2657, pp. 997-1006. Springer Verlag, June 2003. ISBN 3-540-40194-6.
154 R.M.H. Merks; A.G. Hoekstra; J.A. Kaandorp and P.M.A. Sloot: Problem Solving Environment for Modelling Stony Coral Morphogenesis, in P.M.A. Sloot; D. Abramson; A.V. Bogdanov; J.J. Dongarra; A.Y. Zomaya and Y.E. Gorbachev, editors, Computational Science - ICCS 2003, Melbourne, Australia and St. Petersburg, Russia, Proceedings Part I, ICCS 2003, in series Lecture Notes in Computer Science, vol. 2657, pp. 639-648. Springer Verlag, June 2003. ISBN 3-540-40194-6.
155 R.M.H. Merks; A.G. Hoekstra; J.A. Kaandorp and P.M.A. Sloot: Models of coral growth: Spontaneous branching, compactification and the Laplacian growth assumption, Journal of Theoretical Biology, vol. 224/2, pp. 153-166. September 2003.
156 R.M.H. Merks; A.G. Hoekstra; J.A. Kaandorp and P.M.A. Sloot: Branching and compactification in a model of coral growth: a critical reinvestigation of the effect of hydrodynamics, in V. Capasso, editor, Mathematical modelling & Computing in Biology and Medicine; 5th ESMTB Conference 2002, pp. 539-544. MIRIAM (Milan Research Centre for Industrial and Applied Mathematics), 2003.
157 R.M.H. Merks; A.G. Hoekstra; J.A. Kaandorp and P.M.A. Sloot: Diffusion Limited Growth In Laminar Flows, International Journal of Modern Physics C, vol. 14, nr 9 pp. 1171-1182. 2003.
158 A.M.M. Artoli; A.G. Hoekstra and P.M.A. Sloot: 3D Pulsatile flow with the Lattice Boltzmann BGK Method, International Journal of Modern Physics C, vol. 13, nr 8 pp. 1119-1134. October 2002.
159 A.M.M. Artoli; A.G. Hoekstra and P.M.A. Sloot: Accuracy of 2D pulsatile flow in the lattice Boltzmann BGK method, in P.M.A. Sloot; C.J.K. Tan; J.J. Dongarra and A.G. Hoekstra, editors, Computational Science - ICCS 2002, Proceedings Part I, in series Lecture Notes in Computer Science, vol. 2329, pp. 361-370. Springer Verlag, April 2002. ISBN 3-54043591-3.
160 B.D. Kandhai; U. Tallarek; D. Hlushkou; A.G. Hoekstra; P.M.A. Sloot and H. van As: Numerical simulation and measurement of liquid hold-up in biporous media containing discrete stagnant zones, Philosophical Transactions: Mathematical, Physical & Engineering Sciences, vol. 360, nr 1792 pp. 521-534. The Royal Society, 2002.
161 B.D. Kandhai; D. Hlushkou; A.G. Hoekstra; P.M.A. Sloot; H. van As and U. Tallarek: Influence of Stagnant Zones on Transient and Asymptotic Dispersion in Macroscopically Homogeneous Porous Media, Physical Review letters, vol. 88, nr 23 pp. 234501:1-4. 2002.
162 R.M.H. Merks; A.G. Hoekstra and P.M.A. Sloot: The moment propagation method for advection-diffusion in the lattice Boltzmann method: validation and Péclet number limits, Journal of Computational Physics, vol. 183, pp. 563-576. Academic Press Professional, Inc., San Diego, CA, USA, 2002. ISSN 0021-9991. (DOI: 10.1006/jcph.2002.7209)
163 R.M.H. Merks; A.G. Hoekstra; J.A. Kaandorp and P.M.A. Sloot: Branching and compactification in a model of coral growth: a critical reinvestigation of the effect of hydrodynamics, in ESMTB2002: 5th conference of the European Society of the Mathematical and Theoretical Biology, book of abstracts, (abstract) European Society of Mathematical and Theoretical Biology, pp. 254. Milano, Italy, July 2002.
164 R.M.H. Merks; A.G. Hoekstra; J.A. Kaandorp and P.M.A. Sloot: Spontaneous branching in a polyp oriented model of stony coral growth, in P.M.A. Sloot; C.J.K. Tan; J.J. Dongarra and A.G. Hoekstra, editors, Computational Science - ICCS 2002, Proceedings Part I, in series Lecture Notes in Computer Science, vol. 2329, pp. 88-96. Springer Verlag, April 2002. ISBN 3-54043591-3.
165 P.M.A. Sloot; C.J.K. Tan; J. Dongarra and A.G. Hoekstra: Computational Science - ICCS 2002, Proceedings Part III, in series Lecture Notes in Computer Science, vol. 2331, Springer Verlag, 2002. ISBN 3-54043594-8.
166 P.M.A. Sloot; C.J.K. Tan; J. Dongarra and A.G. Hoekstra: Computational Science - ICCS 2002, Proceedings Part I, in series Lecture Notes in Computer Science, vol. 2329, Springer Verlag, 2002. ISBN 3-54043591-3.
167 P.M.A. Sloot; C.J.K. Tan; J. Dongarra and A.G. Hoekstra: Computational Science - ICCS 2002, Proceedings Part II, in series Lecture Notes in Computer Science, vol. 2330, Springer Verlag, 2002. ISBN 3-54043593-X.
168 A.M.M. Artoli; A.G. Hoekstra and P.M.A. Sloot: Time dependent flow in a rigid tube using the Lattice Boltzmann Method, in J.P. Boonand; P.V. Coveney and S. Succi, editors, International Conference on Discrete Simulation of Fluid Dynamics, (abstract) in series Europhysics Conference Abstracts, vol. 25H, pp. 3. 2001.
169 A.M.M. Artoli; B.D. Kandhai; H.C.J. Hoefsloot; A.G. Hoekstra and P.M.A. Sloot: Shear Stress in Lattice Boltzmann Simulations, in F. Hossfeld and K. Binder, editors, Europhysics Conference on Computational Physics. Aachen, Germany, 5-8 September 2001. Book of Abstracts., (abstract) John von Neumann Institute for Computing, in series Publication Series of the John von Neumann Institute for Computing, vol. 8, pp. A127. 2001.
170 L.O. Hertzberger; A.G. Hoekstra and R.D. Williams: Proceedings High-Performance Computing and Networking (HPCN Europe 2001), Amsterdam, The Netherlands, in series Lecture Notes in Computer Science, vol. 2110, Springer-Verlag, 2001. ISBN 3-540-42293-5.
171 A.G. Hoekstra and P.M.A. Sloot: Wall effects on density fluctuations in the GBL thermal lattice gas automaton, Computer Physics Communications, vol. 142, nr 1-3 pp. 151-154. December 2001.
172 A.G. Hoekstra; M.O. Frijlink; L.B.F.M. Waters and P.M.A. Sloot: Radiation Forces in the Discrete Dipole Approximation, Journal of the Optical Society of America A, vol. 18, nr 8 pp. 1944-1953. August 2001.
173 B.D. Kandhai; A. Koponen; A.G. Hoekstra and P.M.A. Sloot: Iterative momentum relaxation for fast lattice-Boltzmann simulations, Future Generation Computer Systems, vol. 18, nr 1 pp. 89-96. September 2001. ISSN 0167-739X.
174 R.M.H. Merks; A.G. Hoekstra and P.M.A. Sloot: Validation of the Lowe-Frenkel tracer dispersion method in the lattice Boltzmann method, in F. Hossfeld and K. Binder, editors, Europhysics Conference on Computational Physics. Aachen, Germany, 5-8 September 2001. Book of Abstracts., (abstract) John von Neumann Institute for Computing, in series Publication Series of the John von Neumann Institute for Computing, vol. 8, pp. A140. 2001.
175 R.M.H. Merks; A.G. Hoekstra and P.M.A. Sloot: Validation of the Lowe-Frenkel tracer dispersion method in the lattice Boltzmann method, in R.L. Lagendijk; J.W.J. Heijnsdijk; A.D. Pimentel and M.H.F. Wilkinson, editors, Proceedings of the 7th annual conference of the Advanced School for Computing and Imaging, pp. 137-141. ASCI, May 2001. ISBN 90-803086-6-8.
176 P.M.A. Sloot and A.G. Hoekstra: Cellular Automata as a Mesoscopic Approach to Model and simulate Complex Systems, in V.N. Alexandrov; J.J. Dongarra; B.A. Juliano; R.S. Renner and C.J.K. Tan, editors, Proceedings of the 2001 International Conference on Computational Science ICCS 2001, in series Lecture Notes in Computer Science, vol. 2074 (II), pp. 518-527. Springer Verlag, Heidelberg, New York, May 2001. ISBN: 3-540-42233-1.
177 P.M.A. Sloot; J.A. Kaandorp; A.G. Hoekstra and B.J. Overeinder: Distributed Cellular Automata: Large Scale Simulation of Natural Phenomena, in A.Y. Zomaya; F. Ercal and S. Olariu, editors, Solutions to Parallel and Distributed Computing Problems: Lessons from Biological Sciences, pp. 1-46. Computer Centre University of Tromso, 2001.
178 H.E. Bal; R.A.F. Bhoedjang; R.F.H. Hofman; C.J.H. Jacobs; T. Kielmann; J. Maassen; R. van Nieuwpoort; J. Romein; L. Renambot; T. Rühl; R. Veldema; K. Verstoep; A. Baggio; G. Ballintijn; I. Kuz; G. Pierre; M.R. van Steen; A.S. Tanenbaum; G. Doornbos; D. Germans; H.J.W. Spoelder; E.-J. Baerends; S. van Gisbergen; H. Afsarmanesh; G.D. van Albada; A.S.Z. Belloum; D. Dubbeldam; Z.W. Hendrikse; L.O. Hertzberger; A.G. Hoekstra; K.A. Iskra; B.D. Kandhai; D.C. Koelma; F. van der Linden; B.J. Overeinder; P.M.A. Sloot; P.F. Spinnato; D.H.J. Epema; A. van Gemund; P.P. Jonker; A. Radulescu; C. van Reeuwijk; H.J. Sips; P.M.W. Knijnenburg; M. Lew; F. Sluiter; L. Wolters; H. Blom and A.J. van der Steen: The Distributed ASCI supercomputer project, Operating Systems Review, vol. 34, nr 4 pp. 76-96. Association for Computing Machinery, Special Interest Group on Operating Systems, October 2000.
179 D. Dubbeldam; A.G. Hoekstra and P.M.A. Sloot: Dynamic Structure Factor in Single and Two-Species Thermal GBL Lattice Gas, Computer Physics Communications, vol. 129, pp. 13-20. Elsevier Science B.V., 2000.
180 A.G. Hoekstra; M.O. Frijlink and P.M.A. Sloot: Calculation of the radiation forces on each dipole in the discrete dipole approximation, in G. Videen; Q. Fu and P. Chylek, editors, Light Scattering by Nonspherical Particles: Halifax Contributions, pp. 237-240. Army Research Laboratory, Adelphi, USA, 2000. ISBN 0-9702316-0-1.
181 A.G. Hoekstra and P.M.A. Sloot: Distributed Particle Simulation of Flow in Complex Geometries, in M. Ingber; H. Powers and C.A. Brebbia, editors, High Performance Computing in Engineering VI, pp. 371-380. WIT Press, Southampton, 2000.
182 A.G. Hoekstra and P.M.A. Sloot: Biophysical and Biomedical Applications of Non-Spherical Scattering, in M.I. Mishchenko; J.W. Hovenier and L.D. Travis, editors, Light Scattering by Nonspherical Particles, Theory, Measurements, and Applications, pp. 585-602. Academic Press, San Diego, San Francisco, New York, Boston, London, Sydney, Tokyo, 2000. ISBN: 0-12-498660-9.
183 B.D. Kandhai; W. Soll; S. Chen; A.G. Hoekstra and P.M.A. Sloot: Finite-Difference Lattice-BGK Methods on Nested Grids, Computer Physics Communications, vol. 129, pp. 100-109. 2000.
184 D. Dubbeldam; A.G. Hoekstra and P.M.A. Sloot: Computational Aspects of Multi-Species Lattice-Gas Automata, in M. Boasson; J.A. Kaandorp; J.F.M. Tonino and M.G. Vosselman, editors, Proceedings of the fifth annual conference of the Advanced School for Computing and Imaging ASCI, June 15-17, 1999, ASCI, pp. 267-273. ASCI, Delft, June 1999.
185 D. Dubbeldam; A.G. Hoekstra and P.M.A. Sloot: Computational Aspects of Multi-Species Lattice-Gas Automata, in P.M.A. Sloot; M.T. Bubak; A.G. Hoekstra and L.O. Hertzberger, editors, High-Performance Computing and Networking (HPCN Europe '99), Amsterdam, The Netherlands, in series Lecture Notes in Computer Science, nr 1593 pp. 339-349. Springer-Verlag, Berlin, April 1999. ISBN 3-540-65821-1.
186 A.G. Hoekstra; M.O. Frijlink; D. de Kanter and P.M.A. Sloot: Two New Applications of Large Scale DDA Simulations, in F. Obelleiro; J.L. Rodriguez and T. Wriedt, editors, Proceedings of the 4th Conference on Electromagnetic and Light Scattering by Nonspherical Particles: Theory and Applications, pp. 333-334. 1999.
187 B.D. Kandhai; A. Koponen; A.G. Hoekstra and P.M.A. Sloot: Iterative Momentum Relaxation for Fast Lattice-Boltzmann Simulations, in M. Boasson; J.A. Kaandorp; J.F.M. Tonino and M.G. Vosselman, editors, Proceedings of the fifth annual conference of the Advanced School for Computing and Imaging ASCI, June 15-17, 1999, ASCI, pp. 274-278. ASCI, Delft, June 1999.
188 B.D. Kandhai; A. Koponen; A.G. Hoekstra; M. Kataja; J. Timonen and P.M.A. Sloot: Implementation aspects of 3D Lattice-BGK: Boundaries, Accuracy and a new Fast Relaxation Method, J. Comp. Phys., vol. 150, pp. 482-501. 1999.
189 B.D. Kandhai; D.J.-E. Vidal; A.G. Hoekstra; H.C.J. Hoefsloot; P. Iedema and P.M.A. Sloot: Lattice-Boltzmann and finite element simulations of fluid flow in a SMRX mixer, Int. J. Numer. Meth. Fluids, vol. 31, pp. 1019-1033. 1999.
190 B.D. Kandhai; A. Koponen; A.G. Hoekstra and P.M.A. Sloot: Iterative Momentum Relaxation for Fast Lattice-Boltzmann Simulations, in P.M.A. Sloot; M.T. Bubak; A.G. Hoekstra and L.O. Hertzberger, editors, High-Performance Computing and Networking (HPCN Europe '99), Amsterdam, The Netherlands, in series Lecture Notes in Computer Science, nr 1593 pp. 311-318. Springer-Verlag, Berlin, April 1999. ISBN 3-540-65821-1.
191 P.M.A. Sloot; M.T. Bubak; A.G. Hoekstra and L.O. Hertzberger: Proceedings High-Performance Computing and Networking (HPCN Europe '99), Amsterdam, The Netherlands, in series Lecture Notes in Computer Science, vol. 1593, 1999.
192 P.M.A. Sloot; J.A. Kaandorp; A.G. Hoekstra and B.J. Overeinder: Distributed Simulation with Cellular Automata: Architecture and Applications, in J. Pavelka; G. Tel and M. Bartosek, editors, SOFSEM'99 Theory and Practice of Informatics, Proceedings of 26th Seminar on Current Trends, in Theory and Practice of Informatics, Milovy, Czech Republic, November 27 - December 4, in series Lecture Notes on Computer Science, nr 1725 pp. 203-249. Springer-Verlag, 1999. ISBN 3-540-66694-X.
193 J.M. Braan; A.G. Hoekstra and P.M.A. Sloot: Prototyping an HPCNet Distance Learning Environment: Rationale and Implementation, Dept. of Comp. Sys., Univ. of Amsterdam, number CS-98-02, 1998.
194 L. Dorst; A.G. Hoekstra; J.M. van den Akker; M. Bergman; F.C.A. Groen; J.M. Lagerberg; A. Visser; H.H. Yakali and L.O. Hertzberger: Evaluating Automatic Debiting Systems by Modelling and Simulation of Virtual Sensors, IEEE instrumentation and measurement, vol. 1, pp. 18-25. 1998.
195 A.G. Hoekstra; M.D. Grimminck and P.M.A. Sloot: Large Scale Simulations of Elastic Light Scattering by a Fast Dipole Approximation, Int. J. Mod. Phys. C, vol. 9, pp. 87-102. 1998.
196 A.G. Hoekstra and A. Bode: Guest Editorial, High Performance Computing and Networking Europe 1997, Future Generation Computer Systems, vol. 13, nr 4-5 pp. 247-249. 1998.
197 A.G. Hoekstra and A. Bode: Special Issue on High Performance Computing and Networking Europe 1997, Future Generation Computer Systems, (Guest Editorship) 1998.
198 A.G. Hoekstra and P.M.A. Sloot: A Parallel Fast Discrete Dipole Approximation for Large Scale Simulations of Elastic Light Scattering, in B.M. ter Haar Romeny; D.H.J. Epema; J.F.M. Tonino and A.A. Wolters, editors, ASCI '98, Proceedings of the fourth annual conference of the Advanced School for Computing and Imaging, Lommel, Belgium, June 9-11, 1998, pp. 73-79. Advanced School for Computing and Imaging (ASCI), 1998.
199 A.G. Hoekstra; J. Rahola and P.M.A. Sloot: Accuracy of Internal Fields in Volume Integral Equation Simulations of Light Scattering, Applied Optics, vol. 37, pp. 8482-8497. 1998.
200 A.G. Hoekstra; J. Rahola and P.M.A. Sloot: Internal Fields In Volume Integral Equation Simulations Of Light Scattering: Accuracy And Resonances, in M.I. Mishchenko; L.D. Travis and J.W. Hovenier, editors, Proceedings of Conference on Light Scattering by Nonspherical Particles: Theory, Measurements, and Applications, pp. 16-19. American Meteorological Society, 1998.
201 B.D. Kandhai; A. Koponen; A.G. Hoekstra; M. Kataja; J. Timonen and P.M.A. Sloot: Lattice Boltzmann Hydrodynamics on Parallel Systems, Computer Physics Communications, vol. 111, pp. 14-26. 1998.
202 B.D. Kandhai; D. Dubbeldam; A.G. Hoekstra and P.M.A. Sloot: Parallel Lattice-Boltzmann Simulation of Fluid Flow in Centrifugal Elutration Chambers, in P.M.A. Sloot; M.T. Bubak and L.O. Hertzberger, editors, High-Performance Computing and Networking (HPCN Europe '98), Amsterdam, The Netherlands, in series Lecture Notes in Computer Science, nr 1401 pp. 173-182. Springer-Verlag, 1998. ISBN 3-540-64443-1.
203 B.D. Kandhai; D. Dubbeldam; A.G. Hoekstra and P.M.A. Sloot: Lattice Boltzmann hydrodynamics in Centrifugal Elutriation Chambers, in B.M. ter Haar Romeny; D.H.J. Epema; J.F.M. Tonino and A.A. Wolters, editors, Proceedings of the fourth annual conference of the Advanced School for Computing and Imaging, pp. 269-274. 1998.
204 B.D. Kandhai; D.J.-E. Vidal; A.G. Hoekstra; H.C.J. Hoefsloot; P. Iedema and P.M.A. Sloot: A comparison between Lattice-Boltzmann and finite element simulations of fluid flow in Static Mixer Reactors, Int. J. Mod. Phys. C, vol. 9, pp. 1123-1128. 1998.
205 M.A. Kartawidjaja and A.G. Hoekstra: Memory Efficiency of Parallel Programs and Memory Bounded Speedup, in P.M.A. Sloot; M.T. Bubak and L.O. Hertzberger, editors, High-Performance Computing and Networking (HPCN Europe '98), Amsterdam, The Netherlands, in series Lecture Notes in Computer Science, nr 1401 pp. 766-775. Springer-Verlag, 1998. ISBN 3-540-64443-1.
206 A. Koponen; B.D. Kandhai; E. Héllen; M. Alava; A.G. Hoekstra; M. Kataja; K. Niskanen; P.M.A. Sloot and J. Timonen: Permeability of three-dimensional random fibre webs, Physical Review Letters, vol. 80, pp. 716-719. 1998.
207 L. Dorst; F.C.A. Groen; J.M. van den Akker; J. Breeman; A.G. Hoekstra; J.M. Lagerberg; A. Visser; H.H. Yakali and L.O. Hertzberger: The virtual sensor concept applied to simulation: the evaluation of Automatic Debiting System, in Proceedings 1997 Workshop on Emergent Technologies and Virtual Systems for Instrumentation and Measurements, pp. 118-124. 1997.
208 A.G. Hoekstra; L. Dorst; M. Bergman; J.M. Lagerberg; A. Visser; H.H. Yakali; F.C.A. Groen and L.O. Hertzberger: High Performance Discrete Event Simulations to evaluate Complex Industrial Systems, The case of Automatic Debiting Systems for Electronic Toll Collection on Motor Highways, in L.O. Hertzberger and P.M.A. Sloot, editors, High Performance Computing and Networking, in series Lecture Notes in Computer Science, vol. 1225, pp. 41-50. Springer-Verlag, 1997.
209 A.G. Hoekstra; L. Dorst; M. Bergman; J.M. Lagerberg; A. Visser; H.H. Yakali; F.C.A. Groen and L.O. Hertzberger: Modelling and Simulation of Automatic Debiting Systems for Electronic Toll Collection on Motor Highways, in M.H. Hamza, editor, Proceedings Iasted International Conference on Applied Modelling and Simulation, pp. 104-108. Iasted, Anaheim, Calgary, Zurich,, 1997. ISBN 0-88986-230-3.
210 A.G. Hoekstra; G.R. Meijer and L.O. Hertzberger: A Generic Simulation Environment to Evaluate and Design Automatic Debitting Systems, in Proceeding Intelligent Transport Systems 1997, 1997.
211 A.G. Hoekstra; W. Hoffmann; M.A. Kartawidjaja; B.J. Overeinder; J. Santoso and P.M.A. Sloot: A High Performance Simulation Environment, project status report, Dept. of Comp. Sys., Univ. of Amsterdam, number CS-97-04, 1997.
212 A.G. Hoekstra and P.M.A. Sloot: Elastic Light Scattering from Single Biological Cells, in J.A. Kong, editor, Progress in Electromagnetics Research Symposium 1997, pp. 583. 1997.
213 A.G. Hoekstra; J.M. Lagerberg and L.O. Hertzberger: Modelling and Simulation of an Automatic Debiting System, in C.E. Vandoni, editor, CERN School of Computing, pp. 233-240. CERN, Geneve, Zwitzerland, 1997.
214 A.G. Hoekstra; P.J.H. Brinkhorst and P.M.A. Sloot: First Results of DDA Simulations of Elastic Light Scattering by Red Blood Cells, in K. Lumme; J.W. Hovenier; K. Muinonen; J. Rahola and H. Laitinen, editors, Proceedings Workshop on Light Scattering by Non-Spherical Particles (SCANOP), pp. 39-40. 1997.
215 B.D. Kandhai; A. Koponen; A.G. Hoekstra; M. Kataja; J. Timonen and P.M.A. Sloot: Performance of a Parallel 3D Lattice Boltzmann code for simulating fluid flow, in J. Timonen, editor, International Workshop on Physics of Structurally Disordered Materials, 1997.
216 A. Koponen; M. Kataja; J. Timonen; B.D. Kandhai; A.G. Hoekstra and P.M.A. Sloot: Fluid Flow in Three-Dimensional Random Fibre Webs, CSC News, High Performance Computing and Networking in Finland, pp. 12-14. 1997.
217 B.J. Overeinder and A.G. Hoekstra: Performance Measurements of a Light Scattering code on the Parsytec CC: Comparison with the Parsytec PowerXplorer, in H.E. Bal; H. Corperaal; P.P. Jonker and J.F.M. Tonino, editors, proceedings of the third annual conference of the Advanced School for Computing and Imaging, pp. 116-119. 1997.
218 R.M.P. Doornbos; M. Schaeffer; A.G. Hoekstra; P.M.A. Sloot; B.G. de Grooth and J. Greve: Elastic Light Scattering Measurements of Single Biological Cells in an Optical Trap, Applied Optics, vol. 34, pp. 729-734. 1996.
219 A.G. Hoekstra and P.M.A. Sloot: Parallel hierarchical methods for large scale simulations of virtual particle models, in E.J.H. Kerckhoffs; P.M.A. Sloot; J.F.M. Tonino and A.M. Vossepoel, editors, Proceedings of the second annual conference of the Advanced School for Computing and Imaging, pp. 49-53. Lommel, Belgium, 1996. ISBN 90-803086-1-7.
220 A.G. Hoekstra; L.O. Hertzberger and P.M.A. Sloot: The Optical `Fingerprints' of Cells: Catching the Bad Guys, IEEE Computational Science and Engineering, vol. Spring, pp. 4-5. 1996.
221 A.G. Hoekstra; P.M.A. Sloot; F. van der Linden; M. van Muiswinkel; J.J.J. Vesseur and L.O. Hertzberger: Native and generic parallel programming environments on a transputer and a PowerPC platform, Concurrency: Practice and Experience, vol. 8, nr 1 pp. 19-46. Jan-Feb 1996.
222 A.G. Hoekstra and P.M.A. Sloot: The Discrete Dipole Approximation - Possibilities and Problems to Simulate Elastic Light Scattering, in T. Wriedt; M. Quinten and K. Bauckhage, editors, Proceedings of the 1st Workshop on Electromagnetic and Light Scattering, Theory and Applications, University of Bremen, in series Lecture Notes in Computer Science, pp. 7-18. 1996. ISBN 3-88722-359-4.
223 A.G. Hoekstra; M.D. Grimminck and P.M.A. Sloot: Simulating Light scattering from micron-sized particles; A parallel fast discrete dipole approximation, in H. Liddell; A. Colbrook; L.O. Hertzberger and P.M.A. Sloot, editors, High-performance computing and networking, in series Lecture notes in computer science, vol. 1067, pp. 269-275. Springer-Verlag, Brussels, Belgium, 1996. ISBN 3-540-61142-8.
224 A.G. Hoekstra and P.M.A. Sloot: Coupled dipole simulations of elastic light scattering on parallel systems, International Journal of Modern Physics C, vol. 6, nr 5 pp. 663-679. 1995.
225 A.G. Hoekstra and P.M.A. Sloot: Development of Parallel Hierarchical Methods, PowerXplorer User Report, 1st edition, pp. 70-76. Parsytec, Aachen, Germany, May 1995.
226 A.G. Hoekstra; P.M.A. Sloot and L.O. Hertzberger: Comparing the Parix and PVM parallel programming enviroments, in Transputer and Occam Engineering Series, Parallel Programming and Applications, Workshop Proceedings, pp. 13-17. IOS Press, Amsterdam, Netherlands, 1995.
227 A.G. Hoekstra; P.M.A. Sloot and L.O. Hertzberger: Comparing the Parix and PVM parallel programming environments, in Gerbrands,J.J.; van Steen,M.R.; van Katwijk,J. and Tonino,J.F.M., editors, ASCI 1995 Conference Proceedings, pp. 288-292. Advanced School for Computing and Imaging (ASCI), 1995.
228 A.G. Hoekstra and P.M.A. Sloot: Simulating Elastic Light Scattering, PowerXplorer User Report, 1st edition, pp. 65-69. Parsytec, Aachen, Germany, May 1995.
229 R.M.P. Doornbos; A.G. Hoekstra; K.E.I. Deurloo; B.G. de Grooth; P.M.A. Sloot and J. Greve: Lissajous-Like Patterns in Scatter Plots of Calibration Beads, Cytometry, vol. 16, pp. 236-242. 1994.
230 A.G. Hoekstra; R.M.P. Doornbos; K.E.I. Deurloo; H.J. Noordmans; B.G. de Grooth and P.M.A. Sloot: Yet another face of Lorenz-Mie scattering: monodisperse distributions of spheres produce Lissajous-like patterns, Applied Optics, vol. 33, pp. 494-500. January 1994.
231 A.G. Hoekstra: Computer Simulations of Elastic Light Scattering, PhD thesis, University of Amsterdam, Amsterdam, The Netherlands, (Promotor: Prof. Dr. L.O. Hertzberger, co-promotor: Dr. P.M.A. Sloot) February 1994.
232 A.G. Hoekstra and P.M.A. Sloot: New Computational Techniques to Simulate Light Scattering from Arbitrary Particles, Particle Particle Systems Characterization, vol. 11, pp. 189-193. 1994.
233 P.M.A. Sloot; A.G. Hoekstra and L.O. Hertzberger: A Comparison of the Iserver-Occam, Parix, Express, and PVM Programming Environments on a Parsytec GCel, in W. Gentzsch and U. Harms, editors, High Performance Computing and Networking, in series Lecture notes in computer science, vol. 797, nr II, Networking and Tools pp. 253-259. Springer-Verlag, Berlin, Germany, April 1994.
234 G.J. Streekstra; A.G. Hoekstra and R.M. Heethaar: Anomalous Diffraction by arbitrarily oriented Ellipsoids: Applications in Ektacytometry, Applied Optics, vol. 33, pp. 7288-7296. November 1994.
235 R.M.P. Doornbos; A.G. Hoekstra; K.E.I. Deurloo; B.G. de Grooth; P.M.A. Sloot and J. Greve: Polarization measurements in a Flow Cytometer; Lissajous Pattererns in scatter plots of calibrations beads, Cytometry, vol. Supplement 6, 1993.
236 A.G. Hoekstra and P.M.A. Sloot: New computational techniques to simulate Light Scattering from arbitrary particles, in M. Maeda, editor, The 3rd International Congress on Optical Particle Sizing '93, pp. 167-172. Yokohama, Japan, August 1993.
237 A.G. Hoekstra and P.M.A. Sloot: Implementation of a Parallel Conjugate Gradient Method for Simulation of Elastic Light, in R.A. de Groot and E.J. Nadrachal, editors, The 4th international conference Physics Computing '92, pp. 345-346. World Scientific Singapore, Prague, Czechoslovakia, 1993.
238 A.G. Hoekstra and P.M.A. Sloot: Simulating Elastic Light Scattering using High Performance Computing methods, in A. Verbraeck and E.J.H. Kerckhoffs, editors, European Simulation Symposium 1993, Society for Computer Simulation International, pp. 462 - 467. Simulation Councils Inc., San Diego, Delft, The Netherlands, October 1993.
239 A.G. Hoekstra and P.M.A. Sloot: Dipolar Unit Size in Coupled Dipole Calculations of the Scattering Matrix Elements Elements, Optics Letters, vol. 18, pp. 1211-1213. 1993.
240 A.G. Hoekstra; R.M.P. Doornbos; K.E.I. Deurloo; H.J. Noordmans; B.G. de Grooth and P.M.A. Sloot: An unexpected signature of Lorenz-Mie scattering observed in FlowCytometric experiments, in M. Maeda, editor, The 3rd International Congress on Optical Particle Sizing '93, pp. 153-158. Yokohama, Japan, August 1993.
241 P.M.A. Sloot and A.G. Hoekstra: Light Scattering simulations on a massively parallel computer at the IC3A, Transputer Applications, vol. 1, nr 1 pp. 42-49. 1993.
242 G.J. Streekstra; A.G. Hoekstra; E.-J. Nijhof and R.M. Heethaar: The interpretation of light scattering by ellipsoidal red blood cells in ektacytometry: Fraunhofer versus anomalous diffraction, Applied Optics, vol. 32, pp. 2266-2272. 1993.
243 G.J. Streekstra; A.G. Hoekstra and R.M. Heethaar: Anomalous diffraction as a tools for the characterization of ellipsoidal red blood cells in Ektacytometry, in M. Maeda, editor, Proceedings of the 3rd International Congress on Optical Particle Sizing, pp. 37-42. Yokohama, Japan, August 1993.
244 P.M.A. Sloot; A.G. Hoekstra; W. Hoffmann and L.O. Hertzberger: Time Complexity of a Parallel Conjugate Gradient Solver for Light Scattering Simulations: Theory and SPMD Implementation, Dept. of Comp. Sys., Univ. of Amsterdam, number CS-92-06, June 1992.
245 P.M.A. Sloot and A.G. Hoekstra: Implementation of a parallel conjugate gradient method for simulation of elastic light scattering, Computers in Physics, (abstract) vol. 6, pp. 323-323. August 1992.
246 A.G. Hoekstra; P.M.A. Sloot; M.J. Haan and L.O. Hertzberger: Time complexity analysis for distributed memory computers: Implementation of a parallel Conjugate Gradient method, in J. van Leeuwen, editor, Computing Science in the Netherlands, pp. 249-266. Amsterdam, The Netherlands, 1991.
247 A.G. Hoekstra; J. Aten and P.M.A. Sloot: The effect of aniosmotic media on the volume of the T-lymphocyte nucleus, Biophysical Journal, vol. 59, pp. 765-774. 1991.
248 A.G. Hoekstra; L.O. Hertzberger and P.M.A. Sloot: Simulation of Elastic Light Scattering on distributed memory machines, Bulletin of the American Physical Society, (abstract) vol. 36, pp. 1798-1798. 1991.
249 G.J. Streekstra; A.G. Hoekstra; E.-J. Nijhof and R.M. Heethaar: The interpretation of the light scattering by ellipsoidal red blood cells in ektacytometry: Fraunhofer versus Anomalous Diffraction, Medical and Biological Engineering, (abstract) vol. 29, pp. 849-849. 1991.
250 P.M.A. Sloot and A.G. Hoekstra: Arbitrarily-shaped particles measured in Flow-through systems, in E. Dan Hirleman, editor, The 2nd internaltional congress on particle sizing, Arizona State University, pp. 605-611. Tempe, Arizona, March 1990.
251 P.M.A. Sloot and A.G. Hoekstra: Morphological characteristics of nucleated bloodcells studied by elastic light scattering, in E. Dan Hirleman, editor, The 2nd international congress on particle sizing, Arizona State University, pp. 382-394. Tempe, Arizona, March 1990.
252 P.M.A. Sloot; M.J. Carels and A.G. Hoekstra: CACE: a case of Embedded System Development, in P.M.G. Apers and J. van Leeuwen, editors, Computing Science in the Netherlands, CWI, pp. 441-462. Amsterdam, The Netherlands, 1989.
253 P.M.A. Sloot; A.G. Hoekstra; H. van de Liet and C.G. Figdor: Scatter matrix elements of biological particles measured in a flow-through system: Theory and practice, Applied Optics, vol. 28, pp. 1752-1762. 1989.
254 J.M.M. de Nijs; A.H.M. Holtslag; A.G. Hoekstra and A. van Silfhout: Calibration method for rotating-analyzer ellipsometers, Journal of the Optical Society of America A, vol. 5, pp. 1466-1471. September 1988.
255 P.M.A. Sloot; A.G. Hoekstra and C.G. Figdor: Osmotic response of lymphocytes measured by means of forward lightscattering: Theoretical considerations, Cytometry, vol. 9, pp. 636-641. 1988.

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