Postdoc or PhD Student Computational Biology, visual analysis of Computer Tomography Scans of scleractinian corals at Centre for Mathematics and Computer Science Amsterdam
The research group of Prof. R. van Liere, Centre for Mathematics and Computer Science
Amsterdam has a vacancy for a PhD Student or postdoc for the project `` A Visual Exploration
environment for Analyzing gene Regulation in Developmental processes''
The project is financed by the Netherlands Organisation for Scientific Research, NWO, research program Visual Interactive Effective Worlds (VIEW). The project is a collaboration with the research group from Dr. J.A. Kaandorp (Section Computational Science, University of Amsterdam). In this project we propose to develop visualization techniques for quantitative research on complex shaped and variable biological and simulated objects and techniques for the visualization of abstract n-dimensional parameter spaces in models of gene regulatory networks. The project aims to develop methods and tools to extract and present geometrical information from spatial measurements and simulation, to develop visualization methods to compare simulation models and measured data, and techniques for the navigation of morphometric parameter spaces (morphospaces) and model parameter spaces. In this part of the project we will focus on the analysis of calcification in 3D images (Computer Tomography Scans) of scleractinian corals. A better understanding of calcification in corals is of fundamental importance in research on the potentially detrimental impact of increasing atmospheric carbon dioxide concentrations, reducing ocean pH and carbonate ion concentrations on the calcification process in corals. The candidate is expected to collaborate extensively with biologists.
Requirements The position is open for candidates at both the PhD or postdoc level. Candidates should have a master's degree (or equivalent) in computer science, mathematics, physics or a comparable expertise. Candidates are expected to have expertise in 3D image processing and computational geometry and have an active interest in life science applications. The candidate should be able to work in an international research team. In the case of candidates applying for a postdoc position: a strong research record, evidenced by a PhD thesis and papers published in peer-reviewed journals. Fluency in oral and written English is required. Motivation to travel to a different country and integrate efficiently in a new research team is fundamental.
More information Further information can be obtained from : Prof. R. van Liere, Centre for Mathematics and Computer Science, Robert.van.Liere@cwi.nl; Dr J. A. Kaandorp, Section Computational Science, University of Amsterdam; e-mail: J.A.Kaandorp@uva.nl
Appointment PhD level: This is a full-time appointment (38 hours a week) for a total of four years Postdoc level: This will be a full-time appointment (38 hours per week) for a period of three years.
Job application Applications should include a letter of motivation, pdfs of most relevant publications and a curriculum vitae. Please include the names and contact information of two references. Applications should be sent by e-mail to Robert.van.Liere@cwi.nl The application period will remain open until the position is filled; however, review of applications will commence on November, 2009, with the intent of filling the position as quickly as possible.
The project is financed by the Netherlands Organisation for Scientific Research, NWO, research program Visual Interactive Effective Worlds (VIEW). The project is a collaboration with the research group from Dr. J.A. Kaandorp (Section Computational Science, University of Amsterdam). In this project we propose to develop visualization techniques for quantitative research on complex shaped and variable biological and simulated objects and techniques for the visualization of abstract n-dimensional parameter spaces in models of gene regulatory networks. The project aims to develop methods and tools to extract and present geometrical information from spatial measurements and simulation, to develop visualization methods to compare simulation models and measured data, and techniques for the navigation of morphometric parameter spaces (morphospaces) and model parameter spaces. In this part of the project we will focus on the analysis of calcification in 3D images (Computer Tomography Scans) of scleractinian corals. A better understanding of calcification in corals is of fundamental importance in research on the potentially detrimental impact of increasing atmospheric carbon dioxide concentrations, reducing ocean pH and carbonate ion concentrations on the calcification process in corals. The candidate is expected to collaborate extensively with biologists.
Requirements The position is open for candidates at both the PhD or postdoc level. Candidates should have a master's degree (or equivalent) in computer science, mathematics, physics or a comparable expertise. Candidates are expected to have expertise in 3D image processing and computational geometry and have an active interest in life science applications. The candidate should be able to work in an international research team. In the case of candidates applying for a postdoc position: a strong research record, evidenced by a PhD thesis and papers published in peer-reviewed journals. Fluency in oral and written English is required. Motivation to travel to a different country and integrate efficiently in a new research team is fundamental.
More information Further information can be obtained from : Prof. R. van Liere, Centre for Mathematics and Computer Science, Robert.van.Liere@cwi.nl; Dr J. A. Kaandorp, Section Computational Science, University of Amsterdam; e-mail: J.A.Kaandorp@uva.nl
Appointment PhD level: This is a full-time appointment (38 hours a week) for a total of four years Postdoc level: This will be a full-time appointment (38 hours per week) for a period of three years.
Job application Applications should include a letter of motivation, pdfs of most relevant publications and a curriculum vitae. Please include the names and contact information of two references. Applications should be sent by e-mail to Robert.van.Liere@cwi.nl The application period will remain open until the position is filled; however, review of applications will commence on November, 2009, with the intent of filling the position as quickly as possible.
SCS colloquium: "Variation and canalization of gene expression in the Drosophila blastoderm."
NWO VIDI for Marten Postma
